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The map label for this gene is sufB [H]

Identifier: 238921897

GI number: 238921897

Start: 106326

End: 107732

Strand: Reverse

Name: sufB [H]

Synonym: EUBELI_20131

Alternate gene names: 238921897

Gene position: 107732-106326 (Counterclockwise)

Preceding gene: 238921898

Following gene: 238921896

Centisome position: 17.19

GC content: 39.94

Gene sequence:

>1407_bases
ATGGAAGAAAAGACATTTGTAGATGACATAAACAGAAGTGTTTATGATATTAAGAACGAAGAGAACGATTCTTATAGAAT
AAAGCAGGGACTTACTCCAGAAATCGTTGAGAAGATATCAGAAGAGAAGCATGATCCTGCTTGGATGAGAGAGTTCAGAC
TTAAGTCATTAGAGATATATAATAATATGCAGGTGCCTGACTGGGGTCCGTCTATTGATGGACTCAATATGGATAATATT
GCTACTTATGTTCGTGCCAATACGAATATGAAGGGTGACTGGAAGGATGTACCAGAAGAGATTAAGGATACATTTGACAG
ATTAGGTATTCCTAAGGCGGAGAGAGAGTCATTAGCCGGAGTTGGAGCACAGTACGACTCAGAGCTTGTATACCATAATG
TCCGTAAGGAGGTTGCTGATCAGGGTGTTGTATACACTGATATGGAAAGTGCACTTACAGGTGAATATGCAGATATGGTA
CACGAGCATTTTATGAAGCTTATTACACCACAGGATCATAAGTTCGCAGCACTTCACGGAGCTGTATGGTCTGGTGGTTC
ATTTGTGTATGTACCAAAGGGAGTTAATCTTGAGATTCCTCTGCAGTCATATTTCAGACTTAATGCTGCAGGAGCAGGTC
AGTTTGAGCATACACTTATTATTGTTGATGAGGGTGCAAGTCTTCACTTTATTGAAGGATGTTCAGCACCTAAATATAAT
GTTGCCAATCTTCATGCAGGTGCGGTTGAGCTTTTTGTGGCTAAGAATGCAAAGCTTCGTTACTCAACAATTGAGAACTG
GAGCAAGAATATGTATAATCTTAACACTAAGAGAGCAACTGTTGCTGAAGGTGGTAAGATTGAATGGGTTTCAGGCTCAT
TTGGTTCGCATGTATCATATCTGTATCCTATGAGTATCCTTAATGGAGAACGCTCAAGCTGTGAATTCACAGGAATTACA
TTTGCAGGAGCAGGACAGAACCTTGATACAGGTATGAAGGTAGTTCATAACGCACCAGCTACAACATCAGTTGTAAGTAC
TAAGTCAATATCTAAGGGTGGCGGAATCAGTACTTTCAGAAGTGCGGTAACAATGACTACCAAGGCTAAGAAGAGTAAAT
CATCAGTTTCATGTCAGTCACTTATGATAGATGATATTTCAAGATCTGATACAATTCCGGCTATGGATATCCGTGTTAAT
GATGCGGATGTAGGACATGAGGCAACAATTGGACGAATCAGTGATGATGCTGTATTTTATCTTATGTCAAGAGGAATTCC
GGAAGATGATGCGAGAGCAATGATTGTTTCAGGATTTGCTGATAATGTATCTAAGGAGCTTCCGCTTGAGTATGCAATGG
AGATGAATAATCTTATTAAGCTTGAGATGAAGGGCAGCATTGGTTAA

Upstream 100 bases:

>100_bases
ATGGTAATGTTGTTGCAACAGGCGACAGTGCTATGATTGATGATATCAATGAGAATGGTTTCGAAAGATTCATCAAGTAA
TTAAGGCTCGGAGGCTTGTA

Downstream 100 bases:

>100_bases
GTTAATCAGAGTGAGGAATATGATATGATAGGTATCGAAGAAAAGGACATGATAATAAACCGTATCCCAGCCAAGACATG
GAATCATCTTCATATGAACC

Product: Fe-S cluster assembly protein SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MEEKTFVDDINRSVYDIKNEENDSYRIKQGLTPEIVEKISEEKHDPAWMREFRLKSLEIYNNMQVPDWGPSIDGLNMDNI
ATYVRANTNMKGDWKDVPEEIKDTFDRLGIPKAERESLAGVGAQYDSELVYHNVRKEVADQGVVYTDMESALTGEYADMV
HEHFMKLITPQDHKFAALHGAVWSGGSFVYVPKGVNLEIPLQSYFRLNAAGAGQFEHTLIIVDEGASLHFIEGCSAPKYN
VANLHAGAVELFVAKNAKLRYSTIENWSKNMYNLNTKRATVAEGGKIEWVSGSFGSHVSYLYPMSILNGERSSCEFTGIT
FAGAGQNLDTGMKVVHNAPATTSVVSTKSISKGGGISTFRSAVTMTTKAKKSKSSVSCQSLMIDDISRSDTIPAMDIRVN
DADVGHEATIGRISDDAVFYLMSRGIPEDDARAMIVSGFADNVSKELPLEYAMEMNNLIKLEMKGSIG

Sequences:

>Translated_468_residues
MEEKTFVDDINRSVYDIKNEENDSYRIKQGLTPEIVEKISEEKHDPAWMREFRLKSLEIYNNMQVPDWGPSIDGLNMDNI
ATYVRANTNMKGDWKDVPEEIKDTFDRLGIPKAERESLAGVGAQYDSELVYHNVRKEVADQGVVYTDMESALTGEYADMV
HEHFMKLITPQDHKFAALHGAVWSGGSFVYVPKGVNLEIPLQSYFRLNAAGAGQFEHTLIIVDEGASLHFIEGCSAPKYN
VANLHAGAVELFVAKNAKLRYSTIENWSKNMYNLNTKRATVAEGGKIEWVSGSFGSHVSYLYPMSILNGERSSCEFTGIT
FAGAGQNLDTGMKVVHNAPATTSVVSTKSISKGGGISTFRSAVTMTTKAKKSKSSVSCQSLMIDDISRSDTIPAMDIRVN
DADVGHEATIGRISDDAVFYLMSRGIPEDDARAMIVSGFADNVSKELPLEYAMEMNNLIKLEMKGSIG
>Mature_468_residues
MEEKTFVDDINRSVYDIKNEENDSYRIKQGLTPEIVEKISEEKHDPAWMREFRLKSLEIYNNMQVPDWGPSIDGLNMDNI
ATYVRANTNMKGDWKDVPEEIKDTFDRLGIPKAERESLAGVGAQYDSELVYHNVRKEVADQGVVYTDMESALTGEYADMV
HEHFMKLITPQDHKFAALHGAVWSGGSFVYVPKGVNLEIPLQSYFRLNAAGAGQFEHTLIIVDEGASLHFIEGCSAPKYN
VANLHAGAVELFVAKNAKLRYSTIENWSKNMYNLNTKRATVAEGGKIEWVSGSFGSHVSYLYPMSILNGERSSCEFTGIT
FAGAGQNLDTGMKVVHNAPATTSVVSTKSISKGGGISTFRSAVTMTTKAKKSKSSVSCQSLMIDDISRSDTIPAMDIRVN
DADVGHEATIGRISDDAVFYLMSRGIPEDDARAMIVSGFADNVSKELPLEYAMEMNNLIKLEMKGSIG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=464, Percent_Identity=34.2672413793103, Blast_Score=296, Evalue=2e-81,
Organism=Escherichia coli, GI1787971, Length=141, Percent_Identity=30.4964539007092, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 51728; Mature: 51728

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKTFVDDINRSVYDIKNEENDSYRIKQGLTPEIVEKISEEKHDPAWMREFRLKSLEIY
CCCCCHHHHHCCCEEECCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NNMQVPDWGPSIDGLNMDNIATYVRANTNMKGDWKDVPEEIKDTFDRLGIPKAERESLAG
CCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC
VGAQYDSELVYHNVRKEVADQGVVYTDMESALTGEYADMVHEHFMKLITPQDHKFAALHG
CCCCCCCHHHHHHHHHHHHHCCCEEECHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEC
AVWSGGSFVYVPKGVNLEIPLQSYFRLNAAGAGQFEHTLIIVDEGASLHFIEGCSAPKYN
EEECCCCEEEECCCCCEEECHHHHEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC
VANLHAGAVELFVAKNAKLRYSTIENWSKNMYNLNTKRATVAEGGKIEWVSGSFGSHVSY
CCEECCCEEEEEEECCCEEEEHHHHHHHHHHEECCCCEEEECCCCEEEEECCCCCCCEEE
LYPMSILNGERSSCEFTGITFAGAGQNLDTGMKVVHNAPATTSVVSTKSISKGGGISTFR
EEEHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHH
SAVTMTTKAKKSKSSVSCQSLMIDDISRSDTIPAMDIRVNDADVGHEATIGRISDDAVFY
HHHEEEHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCEEE
LMSRGIPEDDARAMIVSGFADNVSKELPLEYAMEMNNLIKLEMKGSIG
EECCCCCCCCCCEEEEECCHHCCCHHCCHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure
MEEKTFVDDINRSVYDIKNEENDSYRIKQGLTPEIVEKISEEKHDPAWMREFRLKSLEIY
CCCCCHHHHHCCCEEECCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NNMQVPDWGPSIDGLNMDNIATYVRANTNMKGDWKDVPEEIKDTFDRLGIPKAERESLAG
CCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC
VGAQYDSELVYHNVRKEVADQGVVYTDMESALTGEYADMVHEHFMKLITPQDHKFAALHG
CCCCCCCHHHHHHHHHHHHHCCCEEECHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEC
AVWSGGSFVYVPKGVNLEIPLQSYFRLNAAGAGQFEHTLIIVDEGASLHFIEGCSAPKYN
EEECCCCEEEECCCCCEEECHHHHEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC
VANLHAGAVELFVAKNAKLRYSTIENWSKNMYNLNTKRATVAEGGKIEWVSGSFGSHVSY
CCEECCCEEEEEEECCCEEEEHHHHHHHHHHEECCCCEEEECCCCEEEEECCCCCCCEEE
LYPMSILNGERSSCEFTGITFAGAGQNLDTGMKVVHNAPATTSVVSTKSISKGGGISTFR
EEEHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHH
SAVTMTTKAKKSKSSVSCQSLMIDDISRSDTIPAMDIRVNDADVGHEATIGRISDDAVFY
HHHEEEHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCEEE
LMSRGIPEDDARAMIVSGFADNVSKELPLEYAMEMNNLIKLEMKGSIG
EECCCCCCCCCCEEEEECCHHCCCHHCCHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]