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The map label for this gene is sufD [H]

Identifier: 238921896

GI number: 238921896

Start: 105231

End: 106301

Strand: Reverse

Name: sufD [H]

Synonym: EUBELI_20130

Alternate gene names: 238921896

Gene position: 106301-105231 (Counterclockwise)

Preceding gene: 238921897

Following gene: 238921895

Centisome position: 16.96

GC content: 39.31

Gene sequence:

>1071_bases
ATGATAGGTATCGAAGAAAAGGACATGATAATAAACCGTATCCCAGCCAAGACATGGAATCATCTTCATATGAACCAGAG
CAAGGTTGGAGAGGTTGTAATTAACCGTACAGGTGAGTTAAATGCTTCTGTTAATGATGTAAGTCTCATTGATGATGGAA
AGCTTAACAATGGTGAGCTTGACAATATCATTGGTGGATGTGGTCAGGAGATTACAGAGGCAGCTAAGAAGTCACAGACT
GAACCTGTATATTATATAACAGATAAGAAGAATGCAGGTTTTGTAAGACTCGACTTCAATTATGGAAAGAGTAATGCAGA
CATCAATGTTGTTGGTATTGAAACTAAAGAGAATGCCAGCATTGATGTTTACATGGATTTTAATGGAGATAAAGATGGAG
AAGGCTTCGCAGCAGTACAGACAAGATTATATGCCGCCAAGGATTCGGTTATCCGTCTTATCCAGATTCAGAGGGTAGGC
AGTGAGACAACATTTATTAATGATATCGGTGGTTACTGTGAAGATGGTGCAAGAATTGAACTTGTGCAGCTTTATTTAAG
CGGAAAGAACAGATACGAAGGCTGTGAGATTAAGCTTGCAGGTGATGGAAGCTCTATGTCTGCAGAGATTGGATATGTTG
CAGCAGGTAAAGAAAGACTTGATATGAACTACTGCGTAAGACATATCGGCAAGAAGACAGAATGTGCAATCAATGCGGCA
GGTGCATTGAGAGATACAGCATTTAAGCTGTTCAGAGGAACTATTGATTTCATTAAGGGTTCAGCAGGTTCTGTTGGTAA
TGAGAAGGAAGAAGTTCTTCTTATTGATGAAAAATGTGTCAACCAGACTATTCCTATTATTCTATGTGCAGAAGAAGATG
TTGTCGGTAATCACGGTGCAACTATAGGAAAGCCTGATGAGGAGCTTTTATTCTATCTTGAATCAAGAGGAATACCGGCA
CAAGAATGTTATAATATGCTGGCAGCAGCTAAGCTTTTAGCTGTATGCGGCAAAATCCCTGATGATGGTATCAGGAACGA
GATACATGACTACATTAAAGAGGTTTATTAA

Upstream 100 bases:

>100_bases
TAAGGAGCTTCCGCTTGAGTATGCAATGGAGATGAATAATCTTATTAAGCTTGAGATGAAGGGCAGCATTGGTTAAGTTA
ATCAGAGTGAGGAATATGAT

Downstream 100 bases:

>100_bases
TGAGTGAGTTAAGTAAGACGATTGAGTCTATAAGAAAAGATTTCCCACTTATTTCGGGAAGCAATATTGCATATCTTGAT
AATGCAGCGACTACACAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIGIEEKDMIINRIPAKTWNHLHMNQSKVGEVVINRTGELNASVNDVSLIDDGKLNNGELDNIIGGCGQEITEAAKKSQT
EPVYYITDKKNAGFVRLDFNYGKSNADINVVGIETKENASIDVYMDFNGDKDGEGFAAVQTRLYAAKDSVIRLIQIQRVG
SETTFINDIGGYCEDGARIELVQLYLSGKNRYEGCEIKLAGDGSSMSAEIGYVAAGKERLDMNYCVRHIGKKTECAINAA
GALRDTAFKLFRGTIDFIKGSAGSVGNEKEEVLLIDEKCVNQTIPIILCAEEDVVGNHGATIGKPDEELLFYLESRGIPA
QECYNMLAAAKLLAVCGKIPDDGIRNEIHDYIKEVY

Sequences:

>Translated_356_residues
MIGIEEKDMIINRIPAKTWNHLHMNQSKVGEVVINRTGELNASVNDVSLIDDGKLNNGELDNIIGGCGQEITEAAKKSQT
EPVYYITDKKNAGFVRLDFNYGKSNADINVVGIETKENASIDVYMDFNGDKDGEGFAAVQTRLYAAKDSVIRLIQIQRVG
SETTFINDIGGYCEDGARIELVQLYLSGKNRYEGCEIKLAGDGSSMSAEIGYVAAGKERLDMNYCVRHIGKKTECAINAA
GALRDTAFKLFRGTIDFIKGSAGSVGNEKEEVLLIDEKCVNQTIPIILCAEEDVVGNHGATIGKPDEELLFYLESRGIPA
QECYNMLAAAKLLAVCGKIPDDGIRNEIHDYIKEVY
>Mature_356_residues
MIGIEEKDMIINRIPAKTWNHLHMNQSKVGEVVINRTGELNASVNDVSLIDDGKLNNGELDNIIGGCGQEITEAAKKSQT
EPVYYITDKKNAGFVRLDFNYGKSNADINVVGIETKENASIDVYMDFNGDKDGEGFAAVQTRLYAAKDSVIRLIQIQRVG
SETTFINDIGGYCEDGARIELVQLYLSGKNRYEGCEIKLAGDGSSMSAEIGYVAAGKERLDMNYCVRHIGKKTECAINAA
GALRDTAFKLFRGTIDFIKGSAGSVGNEKEEVLLIDEKCVNQTIPIILCAEEDVVGNHGATIGKPDEELLFYLESRGIPA
QECYNMLAAAKLLAVCGKIPDDGIRNEIHDYIKEVY

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 38998; Mature: 38998

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIEEKDMIINRIPAKTWNHLHMNQSKVGEVVINRTGELNASVNDVSLIDDGKLNNGEL
CCCCCCHHHHHHCCCCCCCCEEECCHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCH
DNIIGGCGQEITEAAKKSQTEPVYYITDKKNAGFVRLDFNYGKSNADINVVGIETKENAS
HHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCCE
IDVYMDFNGDKDGEGFAAVQTRLYAAKDSVIRLIQIQRVGSETTFINDIGGYCEDGARIE
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEHHHHCCCCCEEECCCCCCCCCCCEEE
LVQLYLSGKNRYEGCEIKLAGDGSSMSAEIGYVAAGKERLDMNYCVRHIGKKTECAINAA
EEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHCCHHHHHHHCCCCCCEEEECC
GALRDTAFKLFRGTIDFIKGSAGSVGNEKEEVLLIDEKCVNQTIPIILCAEEDVVGNHGA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCCCCC
TIGKPDEELLFYLESRGIPAQECYNMLAAAKLLAVCGKIPDDGIRNEIHDYIKEVY
CCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIGIEEKDMIINRIPAKTWNHLHMNQSKVGEVVINRTGELNASVNDVSLIDDGKLNNGEL
CCCCCCHHHHHHCCCCCCCCEEECCHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCH
DNIIGGCGQEITEAAKKSQTEPVYYITDKKNAGFVRLDFNYGKSNADINVVGIETKENAS
HHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCCE
IDVYMDFNGDKDGEGFAAVQTRLYAAKDSVIRLIQIQRVGSETTFINDIGGYCEDGARIE
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEHHHHCCCCCEEECCCCCCCCCCCEEE
LVQLYLSGKNRYEGCEIKLAGDGSSMSAEIGYVAAGKERLDMNYCVRHIGKKTECAINAA
EEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHCCHHHHHHHCCCCCCEEEECC
GALRDTAFKLFRGTIDFIKGSAGSVGNEKEEVLLIDEKCVNQTIPIILCAEEDVVGNHGA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCCCCC
TIGKPDEELLFYLESRGIPAQECYNMLAAAKLLAVCGKIPDDGIRNEIHDYIKEVY
CCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]