Click here to switch to the map view.

The map label for this gene is trkD [H]

Identifier: 238921728

GI number: 238921728

Start: 3773460

End: 3775328

Strand: Reverse

Name: trkD [H]

Synonym: NT01EI_3897

Alternate gene names: 238921728

Gene position: 3775328-3773460 (Counterclockwise)

Preceding gene: 238921731

Following gene: 238921727

Centisome position: 99.03

GC content: 54.15

Gene sequence:

>1869_bases
ATGAGTACAGAACAGAAACGTTCACTGACTACGGTTACACTGGCCGCTATTGGCGTTGTATATGGCGATATAGGCACCAG
CCCGCTATATACCCTGCGCGAGTGTTTTGCTGGGCACTATGGATTTGAGGTTAAGCCAGAGACTGTCTTTGGCTTCCTTT
CGCTGATTTTTTGGATGCAGATTCTGATCGTCTCGCTGAAGTATCTGACCTTTGTGATGCGAGCCGACAACGAAGGTGAA
GGGGGGATACTGACCCTGATGTCGCTGGCTGGCCGTAACACACCGGCGCGGATAACGGCTATGCTGGTGATCCTGGGGCT
GATTGGCGGTAGCTTCTTCTACGGCGAGGTGGTTATCACTCCGGCAATTTCTGTTATGTCTGCCATTGAAGGGCTTGAAA
TTGCTGCCCCGTCGCTGGATCCCTATATCGTTCCGCTCTCTGTTCTGGTGCTAACGGTCCTGTTTTGTATTCAAAAACAC
GGTACCGGCAGTATTGGCCGCTTGTTTGCGCCGGTGATGGTGCTGTGGTTTTTAGCGCTGGCCATATTGGGTGGGCGCAG
TATTCTCGCCAATCCTCAGGTGCTGTATGCCCTGGATCCGCGCTGGGCTATCAACTTCTTTATACATTATAAGGCGCTGG
CATTTTTTTCCCTCGGTGCCGTGGTGCTGTCAATCACCGGGGTCGAGGCGCTGTATGCTGACATGGGCCACTTCGGTAAA
CGGCCGATCCGTCTCGCCTGGTTTCTGTTTGTGATCCCCTCTCTGATGCTGAACTATTTTGGCCAGGGAGCGCTATTGCT
CAAAGATCCGTCGGCGATAAAGAATCCCTTCTTTTTGTTGGCACCTGACTGGGCGCTAATCCCATTGCTGGTATTGGCTA
CCCTCGCTACGGTCATCGCGTCGCAGGCGGTGATTTCCGGCGTCTTTTCTCTGACGCGGCAGGCGGTTCGTCTCGGTTAT
TTGCCGCCGATGCGTATTATTCATACGTCGGATATGGAGGCCGGTCAGATCTATATTCCGGCCATTAACTGGGCGCTATA
TATCAGCGTGGTGTTGGTTATCGTCGGCTTTGAGCGCTCCAGCAATCTGGCGGCGGCCTACGGTATCGCTGTTACCGGTA
CGATGGTGCTGACCAGCATTCTCTCCTGTACCGTCGCGTTTAAAAATTGGCATTGGAACCGTTTCTTGGTCGGGATCCTG
TTGGTATGCCTACTGTTTATCGATATACCGCTGTTTAGTGCCAATGCCATGAAGATATTCTCCGGTGGCTGGTTACCGCT
GACGCTGGGGCTGATGATGTTTATCGTCATGACGACCTGGAAAAGTGAGCGCTTTCGTCTATTGCGTCGCCTGCATGAGC
ACGGAAATTCTCTGGAGGCCATGATCGCCTCGCTGGAAAAGTCACCTCCGGTCAGGGTGCAGGGAACTGCGGTATATATG
TCGCGGGCGGTGAACGTCATTCCCCTGGCGCTGCTGCATAACCTGAAACATAACAAGGTGCTCCATGAGAGGGTGATCTT
GCTGACCCTGCGTACCGAAGATGTGCCCTATGTGCATAATGTGCGTCGCGTCACCCTCGAACAGCTGTCGCCGACGTTTT
GGCGGGTGGTGGCCAGCTATGGCTTTAAGGAAACACCGAACGTTGAGGAGATTTTCCACCGCTGCGGTCTAGAGGGGCTA
TCCTGCCGGATTATGGAGACCTCGTTCTTCATGTCCCATGAGTCACTGCTGCTGGGACACCGGCCTTGGTATCTCAAGGC
GCGGGGCCGGCTGTTCATGGCGCTGAGCCGCAATGCGCTGCAGGCGGCCGATCAGTTTGAGATCCCGCCTAATCGGGTTA
TCGAGCTGGGAACCCAGGTCGAAATCTGA

Upstream 100 bases:

>100_bases
AGTGGGAATACATGTGTATTTATGCATACTGTGCAATCTTTATCTGCGCTCGGGATGTTGGCGCATTGATGGCTGACGGA
AATTTCAAACGAAAAATGTT

Downstream 100 bases:

>100_bases
ACCGTCAAACAGGATAAAGAGTAAAAGGGCGCCTAACGGCGCCTTTTCTCTTTTTACTTACTGTTTAGCTGAATCGTTTT
TACTACGAAACGTTTCGATT

Product: potassium transport protein Kup

Products: K (I) [Cytoplasm] [C]

Alternate protein names: Kup system potassium uptake protein [H]

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MSTEQKRSLTTVTLAAIGVVYGDIGTSPLYTLRECFAGHYGFEVKPETVFGFLSLIFWMQILIVSLKYLTFVMRADNEGE
GGILTLMSLAGRNTPARITAMLVILGLIGGSFFYGEVVITPAISVMSAIEGLEIAAPSLDPYIVPLSVLVLTVLFCIQKH
GTGSIGRLFAPVMVLWFLALAILGGRSILANPQVLYALDPRWAINFFIHYKALAFFSLGAVVLSITGVEALYADMGHFGK
RPIRLAWFLFVIPSLMLNYFGQGALLLKDPSAIKNPFFLLAPDWALIPLLVLATLATVIASQAVISGVFSLTRQAVRLGY
LPPMRIIHTSDMEAGQIYIPAINWALYISVVLVIVGFERSSNLAAAYGIAVTGTMVLTSILSCTVAFKNWHWNRFLVGIL
LVCLLFIDIPLFSANAMKIFSGGWLPLTLGLMMFIVMTTWKSERFRLLRRLHEHGNSLEAMIASLEKSPPVRVQGTAVYM
SRAVNVIPLALLHNLKHNKVLHERVILLTLRTEDVPYVHNVRRVTLEQLSPTFWRVVASYGFKETPNVEEIFHRCGLEGL
SCRIMETSFFMSHESLLLGHRPWYLKARGRLFMALSRNALQAADQFEIPPNRVIELGTQVEI

Sequences:

>Translated_622_residues
MSTEQKRSLTTVTLAAIGVVYGDIGTSPLYTLRECFAGHYGFEVKPETVFGFLSLIFWMQILIVSLKYLTFVMRADNEGE
GGILTLMSLAGRNTPARITAMLVILGLIGGSFFYGEVVITPAISVMSAIEGLEIAAPSLDPYIVPLSVLVLTVLFCIQKH
GTGSIGRLFAPVMVLWFLALAILGGRSILANPQVLYALDPRWAINFFIHYKALAFFSLGAVVLSITGVEALYADMGHFGK
RPIRLAWFLFVIPSLMLNYFGQGALLLKDPSAIKNPFFLLAPDWALIPLLVLATLATVIASQAVISGVFSLTRQAVRLGY
LPPMRIIHTSDMEAGQIYIPAINWALYISVVLVIVGFERSSNLAAAYGIAVTGTMVLTSILSCTVAFKNWHWNRFLVGIL
LVCLLFIDIPLFSANAMKIFSGGWLPLTLGLMMFIVMTTWKSERFRLLRRLHEHGNSLEAMIASLEKSPPVRVQGTAVYM
SRAVNVIPLALLHNLKHNKVLHERVILLTLRTEDVPYVHNVRRVTLEQLSPTFWRVVASYGFKETPNVEEIFHRCGLEGL
SCRIMETSFFMSHESLLLGHRPWYLKARGRLFMALSRNALQAADQFEIPPNRVIELGTQVEI
>Mature_621_residues
STEQKRSLTTVTLAAIGVVYGDIGTSPLYTLRECFAGHYGFEVKPETVFGFLSLIFWMQILIVSLKYLTFVMRADNEGEG
GILTLMSLAGRNTPARITAMLVILGLIGGSFFYGEVVITPAISVMSAIEGLEIAAPSLDPYIVPLSVLVLTVLFCIQKHG
TGSIGRLFAPVMVLWFLALAILGGRSILANPQVLYALDPRWAINFFIHYKALAFFSLGAVVLSITGVEALYADMGHFGKR
PIRLAWFLFVIPSLMLNYFGQGALLLKDPSAIKNPFFLLAPDWALIPLLVLATLATVIASQAVISGVFSLTRQAVRLGYL
PPMRIIHTSDMEAGQIYIPAINWALYISVVLVIVGFERSSNLAAAYGIAVTGTMVLTSILSCTVAFKNWHWNRFLVGILL
VCLLFIDIPLFSANAMKIFSGGWLPLTLGLMMFIVMTTWKSERFRLLRRLHEHGNSLEAMIASLEKSPPVRVQGTAVYMS
RAVNVIPLALLHNLKHNKVLHERVILLTLRTEDVPYVHNVRRVTLEQLSPTFWRVVASYGFKETPNVEEIFHRCGLEGLS
CRIMETSFFMSHESLLLGHRPWYLKARGRLFMALSRNALQAADQFEIPPNRVIELGTQVEI

Specific function: Responsible for the low-affinity transport of potassium into the cell, with the probable concomitant uptake of protons (symport system) [H]

COG id: COG3158

COG function: function code P; K+ transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAK/KUP transporter (TC 2.A.72) family [H]

Homologues:

Organism=Escherichia coli, GI48994960, Length=622, Percent_Identity=80.2250803858521, Blast_Score=1041, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003855
- InterPro:   IPR023051 [H]

Pfam domain/function: PF02705 K_trans [H]

EC number: NA

Molecular weight: Translated: 69082; Mature: 68951

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQKRSLTTVTLAAIGVVYGDIGTSPLYTLRECFAGHYGFEVKPETVFGFLSLIFWMQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ILIVSLKYLTFVMRADNEGEGGILTLMSLAGRNTPARITAMLVILGLIGGSFFYGEVVIT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHH
PAISVMSAIEGLEIAAPSLDPYIVPLSVLVLTVLFCIQKHGTGSIGRLFAPVMVLWFLAL
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AILGGRSILANPQVLYALDPRWAINFFIHYKALAFFSLGAVVLSITGVEALYADMGHFGK
HHHCCCCEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPIRLAWFLFVIPSLMLNYFGQGALLLKDPSAIKNPFFLLAPDWALIPLLVLATLATVIA
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
SQAVISGVFSLTRQAVRLGYLPPMRIIHTSDMEAGQIYIPAINWALYISVVLVIVGFERS
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
SNLAAAYGIAVTGTMVLTSILSCTVAFKNWHWNRFLVGILLVCLLFIDIPLFSANAMKIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SGGWLPLTLGLMMFIVMTTWKSERFRLLRRLHEHGNSLEAMIASLEKSPPVRVQGTAVYM
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEHHHHH
SRAVNVIPLALLHNLKHNKVLHERVILLTLRTEDVPYVHNVRRVTLEQLSPTFWRVVASY
HHHHHHHHHHHHHCCHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHC
GFKETPNVEEIFHRCGLEGLSCRIMETSFFMSHESLLLGHRPWYLKARGRLFMALSRNAL
CCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHCCCHHHCCCCCEEEEECCCEEEEECCHHH
QAADQFEIPPNRVIELGTQVEI
HHCCCCCCCHHHHEECCCCCCC
>Mature Secondary Structure 
STEQKRSLTTVTLAAIGVVYGDIGTSPLYTLRECFAGHYGFEVKPETVFGFLSLIFWMQ
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ILIVSLKYLTFVMRADNEGEGGILTLMSLAGRNTPARITAMLVILGLIGGSFFYGEVVIT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHH
PAISVMSAIEGLEIAAPSLDPYIVPLSVLVLTVLFCIQKHGTGSIGRLFAPVMVLWFLAL
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AILGGRSILANPQVLYALDPRWAINFFIHYKALAFFSLGAVVLSITGVEALYADMGHFGK
HHHCCCCEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPIRLAWFLFVIPSLMLNYFGQGALLLKDPSAIKNPFFLLAPDWALIPLLVLATLATVIA
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
SQAVISGVFSLTRQAVRLGYLPPMRIIHTSDMEAGQIYIPAINWALYISVVLVIVGFERS
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
SNLAAAYGIAVTGTMVLTSILSCTVAFKNWHWNRFLVGILLVCLLFIDIPLFSANAMKIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SGGWLPLTLGLMMFIVMTTWKSERFRLLRRLHEHGNSLEAMIASLEKSPPVRVQGTAVYM
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEHHHHH
SRAVNVIPLALLHNLKHNKVLHERVILLTLRTEDVPYVHNVRRVTLEQLSPTFWRVVASY
HHHHHHHHHHHHHCCHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHC
GFKETPNVEEIFHRCGLEGLSCRIMETSFFMSHESLLLGHRPWYLKARGRLFMALSRNAL
CCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHCCCHHHCCCCCEEEEECCCEEEEECCHHH
QAADQFEIPPNRVIELGTQVEI
HHCCCCCCCHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: K (I) [Periplasm] [C]

Specific reaction: K (I) [Periplasm] = K (I) [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA