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The map label for this gene is rbsD

Identifier: 238921727

GI number: 238921727

Start: 3772849

End: 3773268

Strand: Reverse

Name: rbsD

Synonym: NT01EI_3896

Alternate gene names: 238921727

Gene position: 3773268-3772849 (Counterclockwise)

Preceding gene: 238921728

Following gene: 238921726

Centisome position: 98.98

GC content: 55.71

Gene sequence:

>420_bases
ATGAAAAAAGGCACGGTATTAAATTCTGAACTTTCAGCCCTGATCTCCCGTCTGGGTCATACGGACAGCGTGACGGTTGG
CGATGCCGGGCTGCCGGTTCCTGACGGTATCCAGCGTATCGATCTGGCGCTGACCCATGGCATCCCGCGTTTTATGCAGG
TTATTGAGACGATGACGGCGGAAATGCAGGTTGAGCGTGCCGTTTTGGCGCAGGAGATGGTTGAGGCTAATCCTGACATT
CACCGGCAGCTGGTGACATGGCTGCAGCGGCTGGCGCAGACGCAGGGCAACGCGATTCATATCGACTATGTTTCCCACGG
TCAGTTTAAGGCGCTGAGCGGTGAAAGTAAGGCCATCGTCCGCAGCGGAGAGTGTTCACCCTATGCCAATGTACTGCTGT
ATGCCGGCGTGACCTTTTGA

Upstream 100 bases:

>100_bases
GTTTCGATTATGATCACATTTTTTTATTTTTTGTTTTGTCCAGCCCGGCTATACCTTTACAATCAGCGGTTATCGAAACG
TTTCGCCAGTGGGGCGAGCT

Downstream 100 bases:

>100_bases
GGCCATTATGCAACCGTTACTGGCTTTAACCGCAATCGATAAATCGTTTCCCGGCGTGAAGGCGCTGTCCGGTGCTTCGC
TGAATGTCTATCCCGGACGG

Product: high affinity ribose transport protein RbsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGTVLNSELSALISRLGHTDSVTVGDAGLPVPDGIQRIDLALTHGIPRFMQVIETMTAEMQVERAVLAQEMVEANPDI
HRQLVTWLQRLAQTQGNAIHIDYVSHGQFKALSGESKAIVRSGECSPYANVLLYAGVTF

Sequences:

>Translated_139_residues
MKKGTVLNSELSALISRLGHTDSVTVGDAGLPVPDGIQRIDLALTHGIPRFMQVIETMTAEMQVERAVLAQEMVEANPDI
HRQLVTWLQRLAQTQGNAIHIDYVSHGQFKALSGESKAIVRSGECSPYANVLLYAGVTF
>Mature_139_residues
MKKGTVLNSELSALISRLGHTDSVTVGDAGLPVPDGIQRIDLALTHGIPRFMQVIETMTAEMQVERAVLAQEMVEANPDI
HRQLVTWLQRLAQTQGNAIHIDYVSHGQFKALSGESKAIVRSGECSPYANVLLYAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=58.9928057553957, Blast_Score=182, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_EDWI9 (C5BDG5)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002935242.1
- ProteinModelPortal:   C5BDG5
- GeneID:   7961462
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_3896
- OMA:   RAVIRTG
- ProtClustDB:   CLSK2813764
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15142; Mature: 15142

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGTVLNSELSALISRLGHTDSVTVGDAGLPVPDGIQRIDLALTHGIPRFMQVIETMTA
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVERAVLAQEMVEANPDIHRQLVTWLQRLAQTQGNAIHIDYVSHGQFKALSGESKAIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
RSGECSPYANVLLYAGVTF
ECCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKKGTVLNSELSALISRLGHTDSVTVGDAGLPVPDGIQRIDLALTHGIPRFMQVIETMTA
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVERAVLAQEMVEANPDIHRQLVTWLQRLAQTQGNAIHIDYVSHGQFKALSGESKAIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
RSGECSPYANVLLYAGVTF
ECCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA