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The map label for this gene is rbn [C]

Identifier: 238921698

GI number: 238921698

Start: 3737804

End: 3738682

Strand: Reverse

Name: rbn [C]

Synonym: NT01EI_3859

Alternate gene names: 238921698

Gene position: 3738682-3737804 (Counterclockwise)

Preceding gene: 238921699

Following gene: 238921697

Centisome position: 98.07

GC content: 56.2

Gene sequence:

>879_bases
ATGACGTCATTTTCCCTAAAACGTATTAAAGGCTGGGTCTGCTTTGCCAAGGTTCTGTGGCAGCGGGTGGATGACGATCG
TATGACCATGGTGGCAGGTTCGCTGGCCTATGTCTCCCTGCTCTCTCTGGTACCGCTGATCACGGTGGTATTCTCCCTAT
TTACCGCTTTCCCGATGTTTGCCAGCGTCTCTTTTCAGCTTAAACGCTTTATCTTTACCAACTTCATGCCAGCTGCCGGT
GATGTGGTGCAGTCCTATCTGGAGCAGTTTGTCGCCAACTCCAGCAAGATGACGGCACTGGGTACTATTGGCCTTATCGT
GACTGCCCTGCTGCTGATCTCCTCGGTTGATGGAGCGTTGAACCATATTTGGCGCAGTGAGCGTAAGCGCGCTGTGGTGT
ATTCGTTCGCCGTCTACTGGATGATCCTGACACTGGGGCCGCTGCTGGTGGGAGCCAGCATGGCGATCAGTACCTATCTG
CTGTCGCTGCGTTGGCTGGCGGACAGTGCAGTTTACTCCATGGTGGATCAGCTGCTGCGTCTGTTTCCGCTGCTGCTGTC
GTGCGTCAGCTTCTGGCTGCTATATTGCATTGTACCGACCCAGCGAGTGCCGATGCGCGATGCGTTGGTCGGCGCCGTGG
TTGCTGGCGGGCTGTTTGAACTGGGGAAGAAAGCCTTTGCGCTGTACATCACCGCGTTTCCGTCGTATCAGCTGATTTAC
GGCGTGCTGGCGGTGATCCCGATGCTGTTTGTCTGGGTGTACTGGAGCTGGTGTATTGTGCTGCTTGGCGCAGAGGTGAC
CGTGGCCATCGGCGATTTTCGGGCACACCGCCGGCAGGCGCAGGGGCTGCAGCAGGCGTTGACATCACATCATGATTAA

Upstream 100 bases:

>100_bases
TCGAGTGTCTGCGCTACCCTGAACACCCAAGTGGGCTCGAACGCCCCCAGTGCGGGGAAAGATGTGATTCGCGATGCAGG
CGTAACTGACAGGAGTAAGG

Downstream 100 bases:

>100_bases
GGAGTAAACGGTTCGATGATCGCATTAATTCAGCGGGTTACCCATGCCAGTGTGATGGTAGATAATCAGCTTATCGGAGA
GATCGGCGCGGGCCTGCTGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTSFSLKRIKGWVCFAKVLWQRVDDDRMTMVAGSLAYVSLLSLVPLITVVFSLFTAFPMFASVSFQLKRFIFTNFMPAAG
DVVQSYLEQFVANSSKMTALGTIGLIVTALLLISSVDGALNHIWRSERKRAVVYSFAVYWMILTLGPLLVGASMAISTYL
LSLRWLADSAVYSMVDQLLRLFPLLLSCVSFWLLYCIVPTQRVPMRDALVGAVVAGGLFELGKKAFALYITAFPSYQLIY
GVLAVIPMLFVWVYWSWCIVLLGAEVTVAIGDFRAHRRQAQGLQQALTSHHD

Sequences:

>Translated_292_residues
MTSFSLKRIKGWVCFAKVLWQRVDDDRMTMVAGSLAYVSLLSLVPLITVVFSLFTAFPMFASVSFQLKRFIFTNFMPAAG
DVVQSYLEQFVANSSKMTALGTIGLIVTALLLISSVDGALNHIWRSERKRAVVYSFAVYWMILTLGPLLVGASMAISTYL
LSLRWLADSAVYSMVDQLLRLFPLLLSCVSFWLLYCIVPTQRVPMRDALVGAVVAGGLFELGKKAFALYITAFPSYQLIY
GVLAVIPMLFVWVYWSWCIVLLGAEVTVAIGDFRAHRRQAQGLQQALTSHHD
>Mature_291_residues
TSFSLKRIKGWVCFAKVLWQRVDDDRMTMVAGSLAYVSLLSLVPLITVVFSLFTAFPMFASVSFQLKRFIFTNFMPAAGD
VVQSYLEQFVANSSKMTALGTIGLIVTALLLISSVDGALNHIWRSERKRAVVYSFAVYWMILTLGPLLVGASMAISTYLL
SLRWLADSAVYSMVDQLLRLFPLLLSCVSFWLLYCIVPTQRVPMRDALVGAVVAGGLFELGKKAFALYITAFPSYQLIYG
VLAVIPMLFVWVYWSWCIVLLGAEVTVAIGDFRAHRRQAQGLQQALTSHHD

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=71.3207547169811, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32596; Mature: 32465

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSFSLKRIKGWVCFAKVLWQRVDDDRMTMVAGSLAYVSLLSLVPLITVVFSLFTAFPMF
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVSFQLKRFIFTNFMPAAGDVVQSYLEQFVANSSKMTALGTIGLIVTALLLISSVDGAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NHIWRSERKRAVVYSFAVYWMILTLGPLLVGASMAISTYLLSLRWLADSAVYSMVDQLLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFPLLLSCVSFWLLYCIVPTQRVPMRDALVGAVVAGGLFELGKKAFALYITAFPSYQLIY
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GVLAVIPMLFVWVYWSWCIVLLGAEVTVAIGDFRAHRRQAQGLQQALTSHHD
HHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA