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The map label for this gene is yrdA [H]

Identifier: 238921402

GI number: 238921402

Start: 3457626

End: 3458246

Strand: Direct

Name: yrdA [H]

Synonym: NT01EI_3554

Alternate gene names: 238921402

Gene position: 3457626-3458246 (Clockwise)

Preceding gene: 238921397

Following gene: 238921409

Centisome position: 90.7

GC content: 55.56

Gene sequence:

>621_bases
TTGATTGAATTCCCCCACCGGCGCGCTAGTATCGCCAACATCTCTTCCATTTTTCAGGCGGTCACCATGTCTCTATCCGT
ACGTCCCTATCTCTCTTTTATGCCGACCTTAGGCGAACGCCTCTTTATAGATGCAACCGCAACCGTGATTGGACAGGTCA
CGCTGGGTGACGACGTCAGTATCTGGCCTCAGGTCGTGATCCGTGGCGATGTTAACTCTATTGTCATTGGCGAGCGCAGC
AATATCCAAGACGGCAGCGTGATCCATGTAGGCAACCGTTCCACGTCAACCCAGGGTCACCCGACCATTGTCGGCAGCGA
CGTGACTGTTGGCCATAAGGTGATGCTGCACGGTTGCTGTATTGGCAATAGGGTTCTGATCGGTATGGGCGCCATCGTTT
TGGATGGTGTACAGATAGAAGATGAGGTCATTCTGGGCGCGGGAAGTCTGGTTCCTCCGGGAAAAGGGCTGGAGAGCGGC
TTTTTATATCTGGGCAGCCCGGCTCGCCAAATCCGGCCACTGACGACGCAGGAGCGGGCAGGGCTGCGCCAGTCGGCCGA
CAACTACGTTAACTGGAAGAACGACTATCTCTCACAGGCGGAAATCCACACCCAGCCCTGA

Upstream 100 bases:

>100_bases
CCGCTATTTTGCCCCAAATGAACCGAATGGCGCATTACACAGCAATTGAACTGCTTATACCTCATTACACACAGAGTTAT
CCACATATCGGCAGGCGTTA

Downstream 100 bases:

>100_bases
TCGTCATACGCGTCATCGATAATTTCTCGCTCGGCATACTCCTCCAGCTGCCAGCGCAGGGCCTGAAACAGCGTCAGCGG
CGCCTGATGCCCCTCCTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIEFPHRRASIANISSIFQAVTMSLSVRPYLSFMPTLGERLFIDATATVIGQVTLGDDVSIWPQVVIRGDVNSIVIGERS
NIQDGSVIHVGNRSTSTQGHPTIVGSDVTVGHKVMLHGCCIGNRVLIGMGAIVLDGVQIEDEVILGAGSLVPPGKGLESG
FLYLGSPARQIRPLTTQERAGLRQSADNYVNWKNDYLSQAEIHTQP

Sequences:

>Translated_206_residues
MIEFPHRRASIANISSIFQAVTMSLSVRPYLSFMPTLGERLFIDATATVIGQVTLGDDVSIWPQVVIRGDVNSIVIGERS
NIQDGSVIHVGNRSTSTQGHPTIVGSDVTVGHKVMLHGCCIGNRVLIGMGAIVLDGVQIEDEVILGAGSLVPPGKGLESG
FLYLGSPARQIRPLTTQERAGLRQSADNYVNWKNDYLSQAEIHTQP
>Mature_206_residues
MIEFPHRRASIANISSIFQAVTMSLSVRPYLSFMPTLGERLFIDATATVIGQVTLGDDVSIWPQVVIRGDVNSIVIGERS
NIQDGSVIHVGNRSTSTQGHPTIVGSDVTVGHKVMLHGCCIGNRVLIGMGAIVLDGVQIEDEVILGAGSLVPPGKGLESG
FLYLGSPARQIRPLTTQERAGLRQSADNYVNWKNDYLSQAEIHTQP

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=185, Percent_Identity=61.0810810810811, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1787667, Length=160, Percent_Identity=38.125, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081681, Length=165, Percent_Identity=33.9393939393939, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22174; Mature: 22174

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFPHRRASIANISSIFQAVTMSLSVRPYLSFMPTLGERLFIDATATVIGQVTLGDDVS
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEHEEEEEEECCCCC
IWPQVVIRGDVNSIVIGERSNIQDGSVIHVGNRSTSTQGHPTIVGSDVTVGHKVMLHGCC
CCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEE
IGNRVLIGMGAIVLDGVQIEDEVILGAGSLVPPGKGLESGFLYLGSPARQIRPLTTQERA
CCCEEEEECCEEEECCEEECCEEEEECCCCCCCCCCCCCCEEEECCCHHHHCCCCCHHHC
GLRQSADNYVNWKNDYLSQAEIHTQP
CCHHCCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MIEFPHRRASIANISSIFQAVTMSLSVRPYLSFMPTLGERLFIDATATVIGQVTLGDDVS
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEHEEEEEEECCCCC
IWPQVVIRGDVNSIVIGERSNIQDGSVIHVGNRSTSTQGHPTIVGSDVTVGHKVMLHGCC
CCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEE
IGNRVLIGMGAIVLDGVQIEDEVILGAGSLVPPGKGLESGFLYLGSPARQIRPLTTQERA
CCCEEEEECCEEEECCEEECCEEEEECCCCCCCCCCCCCCEEEECCCHHHHCCCCCHHHC
GLRQSADNYVNWKNDYLSQAEIHTQP
CCHHCCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]