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The map label for this gene is nlpD [H]

Identifier: 238921112

GI number: 238921112

Start: 3129476

End: 3130291

Strand: Reverse

Name: nlpD [H]

Synonym: NT01EI_3251

Alternate gene names: 238921112

Gene position: 3130291-3129476 (Counterclockwise)

Preceding gene: 238921113

Following gene: 238921111

Centisome position: 82.11

GC content: 54.66

Gene sequence:

>816_bases
ATGCTCTCCTCCAGCGGTCGTGTGCAGACGGATGCCCGCGGACATATTGTTTATAACCGCAGCTATCAGTCGATTCCCAA
GGGGAGCTATAACGGTGAAGCCTACACCGTTAAGCGCGGCGATACGCTGTTTTATATTGCCTGGATCACCGGCAGCGATT
TCCGCGATCTGGCTGTGCGCAATAATATTCAGGCGCCCTATAGCCTGAATGTCGGACAGGTTATCCGCATCGGCGGAAAC
GGCGGCGGCGGTATGTTGGCCTCCAATAATATTGTTCCCGTTCAGCCAAGCAGTGCACAAATTCAGACGACGAATGTTGA
TTCTAAATCGGCCAGCGCGTATTCTGACCCTTCGGGTAAACAGAATGTAGGCAGAATGTTGCCTGCAGCAGGAGTGGCAA
GTGCCGCTCCTGCCGTTTCCGCGTCGTCATCCAGCTCTGCGCCGGTAGGGACTTGGCGCTGGCCGACTGACGGTAAGATT
ATCGAAAACTTCTCGTCTGCCGAAGGGGGCAACAAGGGGATCGATATTGCAGGCTCGCGTGGCCAGCCGGTGCAGGCCAC
CGCCGATGGGCGGGTGGTGTATGCCGGTAATGCGTTGCGCGGCTATGGAAACCTGATCATCATTAAACATAATGATGATT
ACCTGAGCGCCTACGCCCATAACGACACCATGCTGGTCCGGGAGCAACAAGAGGTGAAGGCGGGTCAAAAAATTGCCACC
ATGGGCAGTACCGGTGCCAGCTCAGTTAGATTGCACTTTGAAATTCGTTACAAGGGAAAATCCGTAAACCCGCTGCAATA
TCTGCCGCAGCGATAG

Upstream 100 bases:

>100_bases
GGTGGCGGTGTGTACGCTGGTTACAATGTGGCTGGCTGGGTGTAGCAGTAGTAATAGTTCCGCACCGATAAGTTCAGTAA
ATGGCTCGGGCGGTGGACGC

Downstream 100 bases:

>100_bases
TTTGAGCAGGATCGCTGTATCCTGCTCGCAAATCACGGGTAGGGTACAGCTATGAGTCATACTACGCTGAAAGTTAACGA
ATTACATGATGAAGTCGAGT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLSSSGRVQTDARGHIVYNRSYQSIPKGSYNGEAYTVKRGDTLFYIAWITGSDFRDLAVRNNIQAPYSLNVGQVIRIGGN
GGGGMLASNNIVPVQPSSAQIQTTNVDSKSASAYSDPSGKQNVGRMLPAAGVASAAPAVSASSSSSAPVGTWRWPTDGKI
IENFSSAEGGNKGIDIAGSRGQPVQATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIAT
MGSTGASSVRLHFEIRYKGKSVNPLQYLPQR

Sequences:

>Translated_271_residues
MLSSSGRVQTDARGHIVYNRSYQSIPKGSYNGEAYTVKRGDTLFYIAWITGSDFRDLAVRNNIQAPYSLNVGQVIRIGGN
GGGGMLASNNIVPVQPSSAQIQTTNVDSKSASAYSDPSGKQNVGRMLPAAGVASAAPAVSASSSSSAPVGTWRWPTDGKI
IENFSSAEGGNKGIDIAGSRGQPVQATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIAT
MGSTGASSVRLHFEIRYKGKSVNPLQYLPQR
>Mature_271_residues
MLSSSGRVQTDARGHIVYNRSYQSIPKGSYNGEAYTVKRGDTLFYIAWITGSDFRDLAVRNNIQAPYSLNVGQVIRIGGN
GGGGMLASNNIVPVQPSSAQIQTTNVDSKSASAYSDPSGKQNVGRMLPAAGVASAAPAVSASSSSSAPVGTWRWPTDGKI
IENFSSAEGGNKGIDIAGSRGQPVQATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIAT
MGSTGASSVRLHFEIRYKGKSVNPLQYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=280, Percent_Identity=65, Blast_Score=342, Evalue=2e-95,
Organism=Escherichia coli, GI87082174, Length=244, Percent_Identity=47.9508196721311, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI87082297, Length=126, Percent_Identity=38.8888888888889, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=37.5, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 28745; Mature: 28745

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSSGRVQTDARGHIVYNRSYQSIPKGSYNGEAYTVKRGDTLFYIAWITGSDFRDLAVR
CCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCHHHHHH
NNIQAPYSLNVGQVIRIGGNGGGGMLASNNIVPVQPSSAQIQTTNVDSKSASAYSDPSGK
CCCCCCEEECCCCEEEEECCCCCCEEECCCEEEECCCCCEEEEECCCCCCCCCCCCCCCC
QNVGRMLPAAGVASAAPAVSASSSSSAPVGTWRWPTDGKIIENFSSAEGGNKGIDIAGSR
HHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCEEEECCC
GQPVQATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIAT
CCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEHHHHHCCCEEEE
MGSTGASSVRLHFEIRYKGKSVNPLQYLPQR
ECCCCCCEEEEEEEEEECCCCCCHHHHCCCC
>Mature Secondary Structure
MLSSSGRVQTDARGHIVYNRSYQSIPKGSYNGEAYTVKRGDTLFYIAWITGSDFRDLAVR
CCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCHHHHHH
NNIQAPYSLNVGQVIRIGGNGGGGMLASNNIVPVQPSSAQIQTTNVDSKSASAYSDPSGK
CCCCCCEEECCCCEEEEECCCCCCEEECCCEEEECCCCCEEEEECCCCCCCCCCCCCCCC
QNVGRMLPAAGVASAAPAVSASSSSSAPVGTWRWPTDGKIIENFSSAEGGNKGIDIAGSR
HHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCEEEECCC
GQPVQATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIAT
CCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEHHHHHCCCEEEE
MGSTGASSVRLHFEIRYKGKSVNPLQYLPQR
ECCCCCCEEEEEEEEEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]