| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920162
Identifier: 238920162
GI number: 238920162
Start: 2175116
End: 2175469
Strand: Direct
Name: 238920162
Synonym: NT01EI_2268
Alternate gene names: NA
Gene position: 2175116-2175469 (Clockwise)
Preceding gene: 238920161
Following gene: 238920163
Centisome position: 57.05
GC content: 58.47
Gene sequence:
>354_bases ATGCACGATAGTCCAGCGCGCTATATCGACCTGCTGATCACCGACCGCAATTTCACCCTGAACAGCGGCCGGGAACCGGT GCTGTGCGATAACCTGCGCAGCATTGCCCAAGACTGCCAGCACGCCATTATCGAGAGCGGGCTGGCGACACGCATGCTGG CGGAGAAAAGCCCCACCCTGCGCGCTGACCTGATGATGCAGATGATGCTGCTGGTCGAAGATGACGATCGCATCGTTCCG GGCACGGTCAGCGTAACCGAAGAGACGCCGCTTTCCGGCCGGCTGCTTATCCTGGCCGCAACCGAAGATTTTCGCCATGA ACCGCTGAGATTTGAGGTGACACTGAATGATTAA
Upstream 100 bases:
>100_bases AGCAACAACAGCAAAACCGACATCGATCAGTCGGTTCGCACCACCACGTTTAACATCGCCAGTGCGTCTGCCGGCGACAT CAGGGAGCTTCAGGAACTCT
Downstream 100 bases:
>100_bases TGGCAAGCCGAAGGTCGATTACGAGAAAATTTTGGCGGAGCAGGGCATGCCCACCACTCCCGCGCAGGCGCGAGCCCGGT TTGACGCCATCGTCAAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 117
Protein sequence:
>117_residues MHDSPARYIDLLITDRNFTLNSGREPVLCDNLRSIAQDCQHAIIESGLATRMLAEKSPTLRADLMMQMMLLVEDDDRIVP GTVSVTEETPLSGRLLILAATEDFRHEPLRFEVTLND
Sequences:
>Translated_117_residues MHDSPARYIDLLITDRNFTLNSGREPVLCDNLRSIAQDCQHAIIESGLATRMLAEKSPTLRADLMMQMMLLVEDDDRIVP GTVSVTEETPLSGRLLILAATEDFRHEPLRFEVTLND >Mature_117_residues MHDSPARYIDLLITDRNFTLNSGREPVLCDNLRSIAQDCQHAIIESGLATRMLAEKSPTLRADLMMQMMLLVEDDDRIVP GTVSVTEETPLSGRLLILAATEDFRHEPLRFEVTLND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13196; Mature: 13196
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDSPARYIDLLITDRNFTLNSGREPVLCDNLRSIAQDCQHAIIESGLATRMLAEKSPTL CCCCCCEEEEEEEECCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCH RADLMMQMMLLVEDDDRIVPGTVSVTEETPLSGRLLILAATEDFRHEPLRFEVTLND HHHHHHHHHHEECCCCEECCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEECC >Mature Secondary Structure MHDSPARYIDLLITDRNFTLNSGREPVLCDNLRSIAQDCQHAIIESGLATRMLAEKSPTL CCCCCCEEEEEEEECCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCH RADLMMQMMLLVEDDDRIVPGTVSVTEETPLSGRLLILAATEDFRHEPLRFEVTLND HHHHHHHHHHEECCCCEECCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA