| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238920161
Identifier: 238920161
GI number: 238920161
Start: 2172931
End: 2175126
Strand: Direct
Name: 238920161
Synonym: NT01EI_2267
Alternate gene names: NA
Gene position: 2172931-2175126 (Clockwise)
Preceding gene: 238920160
Following gene: 238920162
Centisome position: 57.0
GC content: 61.2
Gene sequence:
>2196_bases ATGCAACGCCTGGAGCTGCTGCTTTCGCTCAATAACAAGCTGACCCGACCGCTGCGTGCGGCCGGCAGTCAGGTACAGGC GTTTGCCGCCACCAGTCGTGCCGCATTCGGCCAAATCGCTATCGGCGGCGCGGCATTGTGGGGGGTGGGTCATGCCATCA AAGGGGCGCTGCAGCCCGCCATCGAAATGGACAGGGCGCTGGGTGAGGTCAGGTCACTGGGGGTGGCGGAGAGCGGACTG CGTAAACTGCAGCGCGCCTCCCTCGACTTCACCATGGCCTATGGTGGCAATGCCGCGGAGTTTGTACGCTCCTCCTACGA TATCCAGTCCGCCATCGCGGGTCTGACCGATAACGAGCTGTCCCGATTTACGGCGGCCTCCGCCACCCTGGCCAGAGCCA CCAAGTCGAGCAGTGCGACAATCACCGCCTACATGGGCACGATGTACGGCATTTTCGAGCAGCAGGCCAACGCCATGGGC AGGGGCGCCTGGGTGGAGCAAATCGCCGGCCAGACGGCGACGGCGGTGCAGATGTTCAAAACCACCGGCGATCAGATGTC TGCCGCATTCACCTCGCTGGGCGCCAGCGCCACCGCTGCCGGCGTCGATGTCGCCGAACAGTTCGCCGTGCTCGGCCAGC TGCAGGCCACCATGAGCGGCAGCGAGGCCGGAACAAAGTACCGGGCGTTCCTGGCCGGCATCGGCGGTGCGCAGACAACC CTGGGGCTGAATTTCACCCGCCGTGACGGCACCATGAAGGGCATCACCGAAATCATGCGCCTGATCCAGGGTAAATTTGG CGATCTGTCCAAAGTTACCGACAGTGACCTACTGGCAAAGGCCTTTGGCTCCAAGCAGGCCGTCGCGATGGTCAAGTTGC TCAATGCCAATATCGGTAATCTGGAAAAGAACATTACCACCCTGGGAAACAGCAGGGGGATGGGTAAGGCCGCCGAGATG GCCGGGGCGATGGCCGATCCTTGGAAACAGAGTCTGGCCGTCATCAATGCCATGCGCATTGAGATCGGCACCCAGTTGCT GCCGGTGCTCTATCCGTTTATCGATCAGGCCGTCAGCGGTGGCCGCGAGTTCATCAAATGGCTGCAGCTCTACCCCAACA TTACCCGCGCCATCGGGCTGATGGCCGTCGCCATGCTGGCGCTGGCCGCCGCGGGTGCCGTCGTCAATATCACGCTGGGT GTCATGCGATTTGTCGGTAGTGGCCTGAAAGCGGCCTTTACCGTGCTCGCCTGGGCATTTCGCCTTAATGCCATCGGCAC CCTGATTTCCGCCAGCGCCACAAAAGTTTATGCCATGGCTCTGCGCCACCTGCGCGCCGGCATGCTTGCCTCGAGTATCG CCGGCCGGGGACTGGCAGTCTCTATCGCCATGGTCACCTGGCCGATACTGCTGATCGGCGCCGCCATCGCAGGCGTCGTG CTGCTGGTCTACAAATTTTGGCAGCCCATCAGGGCCTTTTTCTCGGGCTTCATTCAGGGATTTTCTGACGCCTGGGTCGA GCTATCCAAGGGATCCCCCCTGTTCACCATAATGGCCAGGGGGATTGCCTGGGTGTGGTCCGGTGTAAAAACCCTCTTCG GTTGGCTGTCAGGCCTGTTCACTCCCATCGCGCTGACCGGCGAACAGTTCAGCCGCGTCAGCCAGGCGGGCGCCTCATTT GGCCGCATCGCTGCCGCTGCCGTCAGCGCCATTCTGGCACCGCTGGAGATGATAACCAACGCACTCGGATTGGTGTGGGA TGCCATTGTCATCATTGGCCAGGGATGGATAGACATCTGGGAGGCCATCGATATCGAAAACCCCCTGCAGTCAATGAAGC GTATCGCCGCAGGGATCCTGAACATTTTTGGCAACCTGTGGGCGCTGGTGAAATCCTCATTTTCCAGCGCCTATAACTGG ATCATCGAAAAACTGAACCTGATCCCCGGCGTCAGCATAGAGATGCAGCCCATCCCCACACCCGACGCGCTGAATGGCAA TGCCGGCGACGAGGCCACCCCACTGCTGACCGCAGGACAGGTGCAGAGCGCGGGGCCCGGCGGCATCGGCCAGCAGATCC GCAACAGCAACAACAGCAAAACCGACATCGATCAGTCGGTTCGCACCACCACGTTTAACATCGCCAGTGCGTCTGCCGGC GACATCAGGGAGCTTCAGGAACTCTATGCACGATAG
Upstream 100 bases:
>100_bases GCAGAGTCTCGCCATGGCCGCCTGGCTGGATAACCACTACTGGGAGAGCCTGTGCGCCGCCGTCAATAACGGCATCGTGA AAGCCTTTAAGGGGTAAGAC
Downstream 100 bases:
>100_bases TCCAGCGCGCTATATCGACCTGCTGATCACCGACCGCAATTTCACCCTGAACAGCGGCCGGGAACCGGTGCTGTGCGATA ACCTGCGCAGCATTGCCCAA
Product: phage tail tape measure protein, family
Products: NA
Alternate protein names: Phage Tail Tape Measure Protein Core Region; Tail Tape Measure Protein; Tail Length Determinator; Phage Tail Length Determinator; Tail Tape Measure Protein Bacteriophage Origin; Phage-Related Tail Protein; Phage Tail Tape Measure Core Region; Prophage; Phage-Like Protein; Phage Gene; Phage Tail Tape Measure Family Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MQRLELLLSLNNKLTRPLRAAGSQVQAFAATSRAAFGQIAIGGAALWGVGHAIKGALQPAIEMDRALGEVRSLGVAESGL RKLQRASLDFTMAYGGNAAEFVRSSYDIQSAIAGLTDNELSRFTAASATLARATKSSSATITAYMGTMYGIFEQQANAMG RGAWVEQIAGQTATAVQMFKTTGDQMSAAFTSLGASATAAGVDVAEQFAVLGQLQATMSGSEAGTKYRAFLAGIGGAQTT LGLNFTRRDGTMKGITEIMRLIQGKFGDLSKVTDSDLLAKAFGSKQAVAMVKLLNANIGNLEKNITTLGNSRGMGKAAEM AGAMADPWKQSLAVINAMRIEIGTQLLPVLYPFIDQAVSGGREFIKWLQLYPNITRAIGLMAVAMLALAAAGAVVNITLG VMRFVGSGLKAAFTVLAWAFRLNAIGTLISASATKVYAMALRHLRAGMLASSIAGRGLAVSIAMVTWPILLIGAAIAGVV LLVYKFWQPIRAFFSGFIQGFSDAWVELSKGSPLFTIMARGIAWVWSGVKTLFGWLSGLFTPIALTGEQFSRVSQAGASF GRIAAAAVSAILAPLEMITNALGLVWDAIVIIGQGWIDIWEAIDIENPLQSMKRIAAGILNIFGNLWALVKSSFSSAYNW IIEKLNLIPGVSIEMQPIPTPDALNGNAGDEATPLLTAGQVQSAGPGGIGQQIRNSNNSKTDIDQSVRTTTFNIASASAG DIRELQELYAR
Sequences:
>Translated_731_residues MQRLELLLSLNNKLTRPLRAAGSQVQAFAATSRAAFGQIAIGGAALWGVGHAIKGALQPAIEMDRALGEVRSLGVAESGL RKLQRASLDFTMAYGGNAAEFVRSSYDIQSAIAGLTDNELSRFTAASATLARATKSSSATITAYMGTMYGIFEQQANAMG RGAWVEQIAGQTATAVQMFKTTGDQMSAAFTSLGASATAAGVDVAEQFAVLGQLQATMSGSEAGTKYRAFLAGIGGAQTT LGLNFTRRDGTMKGITEIMRLIQGKFGDLSKVTDSDLLAKAFGSKQAVAMVKLLNANIGNLEKNITTLGNSRGMGKAAEM AGAMADPWKQSLAVINAMRIEIGTQLLPVLYPFIDQAVSGGREFIKWLQLYPNITRAIGLMAVAMLALAAAGAVVNITLG VMRFVGSGLKAAFTVLAWAFRLNAIGTLISASATKVYAMALRHLRAGMLASSIAGRGLAVSIAMVTWPILLIGAAIAGVV LLVYKFWQPIRAFFSGFIQGFSDAWVELSKGSPLFTIMARGIAWVWSGVKTLFGWLSGLFTPIALTGEQFSRVSQAGASF GRIAAAAVSAILAPLEMITNALGLVWDAIVIIGQGWIDIWEAIDIENPLQSMKRIAAGILNIFGNLWALVKSSFSSAYNW IIEKLNLIPGVSIEMQPIPTPDALNGNAGDEATPLLTAGQVQSAGPGGIGQQIRNSNNSKTDIDQSVRTTTFNIASASAG DIRELQELYAR >Mature_731_residues MQRLELLLSLNNKLTRPLRAAGSQVQAFAATSRAAFGQIAIGGAALWGVGHAIKGALQPAIEMDRALGEVRSLGVAESGL RKLQRASLDFTMAYGGNAAEFVRSSYDIQSAIAGLTDNELSRFTAASATLARATKSSSATITAYMGTMYGIFEQQANAMG RGAWVEQIAGQTATAVQMFKTTGDQMSAAFTSLGASATAAGVDVAEQFAVLGQLQATMSGSEAGTKYRAFLAGIGGAQTT LGLNFTRRDGTMKGITEIMRLIQGKFGDLSKVTDSDLLAKAFGSKQAVAMVKLLNANIGNLEKNITTLGNSRGMGKAAEM AGAMADPWKQSLAVINAMRIEIGTQLLPVLYPFIDQAVSGGREFIKWLQLYPNITRAIGLMAVAMLALAAAGAVVNITLG VMRFVGSGLKAAFTVLAWAFRLNAIGTLISASATKVYAMALRHLRAGMLASSIAGRGLAVSIAMVTWPILLIGAAIAGVV LLVYKFWQPIRAFFSGFIQGFSDAWVELSKGSPLFTIMARGIAWVWSGVKTLFGWLSGLFTPIALTGEQFSRVSQAGASF GRIAAAAVSAILAPLEMITNALGLVWDAIVIIGQGWIDIWEAIDIENPLQSMKRIAAGILNIFGNLWALVKSSFSSAYNW IIEKLNLIPGVSIEMQPIPTPDALNGNAGDEATPLLTAGQVQSAGPGGIGQQIRNSNNSKTDIDQSVRTTTFNIASASAG DIRELQELYAR
Specific function: Unknown
COG id: COG5283
COG function: function code S; Phage-related tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77049; Mature: 77049
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLELLLSLNNKLTRPLRAAGSQVQAFAATSRAAFGQIAIGGAALWGVGHAIKGALQPA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHEECHHHHHHHHHHHHHHHHHH IEMDRALGEVRSLGVAESGLRKLQRASLDFTMAYGGNAAEFVRSSYDIQSAIAGLTDNEL HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHH SRFTAASATLARATKSSSATITAYMGTMYGIFEQQANAMGRGAWVEQIAGQTATAVQMFK HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH TTGDQMSAAFTSLGASATAAGVDVAEQFAVLGQLQATMSGSEAGTKYRAFLAGIGGAQTT HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCE LGLNFTRRDGTMKGITEIMRLIQGKFGDLSKVTDSDLLAKAFGSKQAVAMVKLLNANIGN ECCEEECCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCC LEKNITTLGNSRGMGKAAEMAGAMADPWKQSLAVINAMRIEIGTQLLPVLYPFIDQAVSG HHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GREFIKWLQLYPNITRAIGLMAVAMLALAAAGAVVNITLGVMRFVGSGLKAAFTVLAWAF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH RLNAIGTLISASATKVYAMALRHLRAGMLASSIAGRGLAVSIAMVTWPILLIGAAIAGVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LLVYKFWQPIRAFFSGFIQGFSDAWVELSKGSPLFTIMARGIAWVWSGVKTLFGWLSGLF HHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIALTGEQFSRVSQAGASFGRIAAAAVSAILAPLEMITNALGLVWDAIVIIGQGWIDIW HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH EAIDIENPLQSMKRIAAGILNIFGNLWALVKSSFSSAYNWIIEKLNLIPGVSIEMQPIPT HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC PDALNGNAGDEATPLLTAGQVQSAGPGGIGQQIRNSNNSKTDIDQSVRTTTFNIASASAG CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCC DIRELQELYAR CHHHHHHHHCC >Mature Secondary Structure MQRLELLLSLNNKLTRPLRAAGSQVQAFAATSRAAFGQIAIGGAALWGVGHAIKGALQPA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHEECHHHHHHHHHHHHHHHHHH IEMDRALGEVRSLGVAESGLRKLQRASLDFTMAYGGNAAEFVRSSYDIQSAIAGLTDNEL HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHH SRFTAASATLARATKSSSATITAYMGTMYGIFEQQANAMGRGAWVEQIAGQTATAVQMFK HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH TTGDQMSAAFTSLGASATAAGVDVAEQFAVLGQLQATMSGSEAGTKYRAFLAGIGGAQTT HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCE LGLNFTRRDGTMKGITEIMRLIQGKFGDLSKVTDSDLLAKAFGSKQAVAMVKLLNANIGN ECCEEECCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCC LEKNITTLGNSRGMGKAAEMAGAMADPWKQSLAVINAMRIEIGTQLLPVLYPFIDQAVSG HHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GREFIKWLQLYPNITRAIGLMAVAMLALAAAGAVVNITLGVMRFVGSGLKAAFTVLAWAF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH RLNAIGTLISASATKVYAMALRHLRAGMLASSIAGRGLAVSIAMVTWPILLIGAAIAGVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LLVYKFWQPIRAFFSGFIQGFSDAWVELSKGSPLFTIMARGIAWVWSGVKTLFGWLSGLF HHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIALTGEQFSRVSQAGASFGRIAAAAVSAILAPLEMITNALGLVWDAIVIIGQGWIDIW HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH EAIDIENPLQSMKRIAAGILNIFGNLWALVKSSFSSAYNWIIEKLNLIPGVSIEMQPIPT HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC PDALNGNAGDEATPLLTAGQVQSAGPGGIGQQIRNSNNSKTDIDQSVRTTTFNIASASAG CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCC DIRELQELYAR CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA