| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238920147
Identifier: 238920147
GI number: 238920147
Start: 2162145
End: 2162414
Strand: Reverse
Name: 238920147
Synonym: NT01EI_2253
Alternate gene names: NA
Gene position: 2162414-2162145 (Counterclockwise)
Preceding gene: 238920148
Following gene: 238920145
Centisome position: 56.72
GC content: 57.04
Gene sequence:
>270_bases GTGGATATGCGCAGACAAAAAATTAAATGCCGCTGCTGCGGGGCGCCGGCGATTATCCAAAAGACGGTCTGGAAGACCGA CAACTATGATTTTGCCGATGCCTACTACCGCTGTACGCGCCTGGAGTGTGGCCATACCTGGGTGATGAACCTGACCTATT CCCATACCCTGGTGCCGAGTGGGTTGCAAAGCGGTGTCCTGAAGCTGCTGATCGAGCGACTGGGGCCAGAGGAAAAGCAG ATGGCGCTGGAGTTGCTGCAGGGGGGGTAG
Upstream 100 bases:
>100_bases TTCAGCCTGACGTTTGACGATGATGCCCAGATAGCACAGTGAATCGCGGCATGGTTAAAAAATGGGTAAAATTTCGCCAT GACAGCCACGGTGTGCAGGG
Downstream 100 bases:
>100_bases GTGATTGTTCGGCTGAGGGAAGGCTATACTTGTGGAGGCTTGGAGTCTCTCCATCTCACATAATGAACATATGTGTTTTG TGTCATTTCTGATTTTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: Zinc-Finger Protein; Phage-Like Protein; Phage Gene; Bacteriophage Transcription Regulator Protein
Number of amino acids: Translated: 89; Mature: 89
Protein sequence:
>89_residues MDMRRQKIKCRCCGAPAIIQKTVWKTDNYDFADAYYRCTRLECGHTWVMNLTYSHTLVPSGLQSGVLKLLIERLGPEEKQ MALELLQGG
Sequences:
>Translated_89_residues MDMRRQKIKCRCCGAPAIIQKTVWKTDNYDFADAYYRCTRLECGHTWVMNLTYSHTLVPSGLQSGVLKLLIERLGPEEKQ MALELLQGG >Mature_89_residues MDMRRQKIKCRCCGAPAIIQKTVWKTDNYDFADAYYRCTRLECGHTWVMNLTYSHTLVPSGLQSGVLKLLIERLGPEEKQ MALELLQGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10194; Mature: 10194
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 10.1 %Cys+Met (Translated Protein) 5.6 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 10.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMRRQKIKCRCCGAPAIIQKTVWKTDNYDFADAYYRCTRLECGHTWVMNLTYSHTLVPS CCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC GLQSGVLKLLIERLGPEEKQMALELLQGG CHHHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure MDMRRQKIKCRCCGAPAIIQKTVWKTDNYDFADAYYRCTRLECGHTWVMNLTYSHTLVPS CCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC GLQSGVLKLLIERLGPEEKQMALELLQGG CHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA