Click here to switch to the map view.

The map label for this gene is 238920148

Identifier: 238920148

GI number: 238920148

Start: 2162473

End: 2163528

Strand: Reverse

Name: 238920148

Synonym: NT01EI_2254

Alternate gene names: NA

Gene position: 2163528-2162473 (Counterclockwise)

Preceding gene: 238920149

Following gene: 238920147

Centisome position: 56.75

GC content: 61.36

Gene sequence:

>1056_bases
ATGAAGAAAACAAAAACGCCGCCTAAGGCGCGCGGCGGCAAGCTGGGACAGCGCGCTATGCGGCACCGTTCGCCGGGGAG
CTTTATCGAGTTTGGCGATCCCGAGCCGGTCGCGGCCTGGGGGAGCTATAACGGCGTGCTGTGGAGCGGGTACGACGGTT
ATTACCTGCCGCCGATTGAACGGATGGATCTCGCCGTGCTGGCCAACATCGCCCCTTACCACGGTGCAGTGCTGCGCGCC
CGCGTCAATATGGTCATGGCCGGGTTTCAGGGGGGCGGGGGACTGACCCACAGCGATATGGCGGCCGCGGTCACCAACCT
GCTTATCTTCGGGGATATGGGGCTGCTGAAGGTGCGTAATCGGCTGGGGCGCATCAACCGGCTGCACGTTTTACCCTCCC
TCTATCTGCGCCGCACCGCCGATCGCAGGACGGTCATCGTGCAGGGCGGTATCAACGATCTCACCTATGGCGGCGGCGAG
GTGATTTTTGTCGCGCAGTACGATCCCCAGCAGCAGGTCTACGGCGTTCCCGACTACCTCCACGGCATGGAGTCCGCCAT
GCTTAACGTCGATGCCACCCGTTTTCGCCGGCGCTACTACAAGAACGGCGCTCACCTGGGCTATATCCTCTACAGCACCG
ACCCGGATATGGATCCGCAGCTTGAGGGGCTGTTTCGCAAGAAGATTGAGGCATCCAAGGGGGCCGGCAACTTTAAGTCG
ATGTTTATCAACATCCCCGGCGGTGATAAGGAAGGGGTAAAAGTCATCCCCATCGGAGACTCCGGCACCAAGGATGAGTT
TCTGAATATCAAGAACGTCAGCGCGCAGGATCAGCTGACGGCCCACCGCTTTCCGCCCGGCCTCGCCGGTATCATCCCCA
GCAATGCTGGCGGACTGGGTGACCCGCTGAAGGCGCGCGAGGCGTACTACCGGGATGAGGTGATCCCGCTGCGCCGCCTG
ATTATGGAAGGGGTCAATGCCGCTCCCGATATCGGGGGGCTTGGGCGGGTGACATTCAGCCTGACGTTTGACGATGATGC
CCAGATAGCACAGTGA

Upstream 100 bases:

>100_bases
GAAACCGGACACGCCGATATCTTCTTTGCCATCGCTCACGCCCTGGCCAATGAGCCCATCGGCTATAGGAACAAACGCAG
GTCAACCTGGATTTTTGGTG

Downstream 100 bases:

>100_bases
ATCGCGGCATGGTTAAAAAATGGGTAAAATTTCGCCATGACAGCCACGGTGTGCAGGGGTGGATATGCGCAGACAAAAAA
TTAAATGCCGCTGCTGCGGG

Product: phage portal protein, pbsx family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKKTKTPPKARGGKLGQRAMRHRSPGSFIEFGDPEPVAAWGSYNGVLWSGYDGYYLPPIERMDLAVLANIAPYHGAVLRA
RVNMVMAGFQGGGGLTHSDMAAAVTNLLIFGDMGLLKVRNRLGRINRLHVLPSLYLRRTADRRTVIVQGGINDLTYGGGE
VIFVAQYDPQQQVYGVPDYLHGMESAMLNVDATRFRRRYYKNGAHLGYILYSTDPDMDPQLEGLFRKKIEASKGAGNFKS
MFINIPGGDKEGVKVIPIGDSGTKDEFLNIKNVSAQDQLTAHRFPPGLAGIIPSNAGGLGDPLKAREAYYRDEVIPLRRL
IMEGVNAAPDIGGLGRVTFSLTFDDDAQIAQ

Sequences:

>Translated_351_residues
MKKTKTPPKARGGKLGQRAMRHRSPGSFIEFGDPEPVAAWGSYNGVLWSGYDGYYLPPIERMDLAVLANIAPYHGAVLRA
RVNMVMAGFQGGGGLTHSDMAAAVTNLLIFGDMGLLKVRNRLGRINRLHVLPSLYLRRTADRRTVIVQGGINDLTYGGGE
VIFVAQYDPQQQVYGVPDYLHGMESAMLNVDATRFRRRYYKNGAHLGYILYSTDPDMDPQLEGLFRKKIEASKGAGNFKS
MFINIPGGDKEGVKVIPIGDSGTKDEFLNIKNVSAQDQLTAHRFPPGLAGIIPSNAGGLGDPLKAREAYYRDEVIPLRRL
IMEGVNAAPDIGGLGRVTFSLTFDDDAQIAQ
>Mature_351_residues
MKKTKTPPKARGGKLGQRAMRHRSPGSFIEFGDPEPVAAWGSYNGVLWSGYDGYYLPPIERMDLAVLANIAPYHGAVLRA
RVNMVMAGFQGGGGLTHSDMAAAVTNLLIFGDMGLLKVRNRLGRINRLHVLPSLYLRRTADRRTVIVQGGINDLTYGGGE
VIFVAQYDPQQQVYGVPDYLHGMESAMLNVDATRFRRRYYKNGAHLGYILYSTDPDMDPQLEGLFRKKIEASKGAGNFKS
MFINIPGGDKEGVKVIPIGDSGTKDEFLNIKNVSAQDQLTAHRFPPGLAGIIPSNAGGLGDPLKAREAYYRDEVIPLRRL
IMEGVNAAPDIGGLGRVTFSLTFDDDAQIAQ

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 38401; Mature: 38401

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTKTPPKARGGKLGQRAMRHRSPGSFIEFGDPEPVAAWGSYNGVLWSGYDGYYLPPIE
CCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCEEECCCCCEECCCHH
RMDLAVLANIAPYHGAVLRARVNMVMAGFQGGGGLTHSDMAAAVTNLLIFGDMGLLKVRN
HHHHHHHHHCCCCCHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
RLGRINRLHVLPSLYLRRTADRRTVIVQGGINDLTYGGGEVIFVAQYDPQQQVYGVPDYL
HHCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHCCCCHHH
HGMESAMLNVDATRFRRRYYKNGAHLGYILYSTDPDMDPQLEGLFRKKIEASKGAGNFKS
HHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
MFINIPGGDKEGVKVIPIGDSGTKDEFLNIKNVSAQDQLTAHRFPPGLAGIIPSNAGGLG
EEEECCCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHCCCCCCEEECCCCCCCCC
DPLKAREAYYRDEVIPLRRLIMEGVNAAPDIGGLGRVTFSLTFDDDAQIAQ
CCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKKTKTPPKARGGKLGQRAMRHRSPGSFIEFGDPEPVAAWGSYNGVLWSGYDGYYLPPIE
CCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCEEECCCCCEECCCHH
RMDLAVLANIAPYHGAVLRARVNMVMAGFQGGGGLTHSDMAAAVTNLLIFGDMGLLKVRN
HHHHHHHHHCCCCCHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
RLGRINRLHVLPSLYLRRTADRRTVIVQGGINDLTYGGGEVIFVAQYDPQQQVYGVPDYL
HHCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHCCCCHHH
HGMESAMLNVDATRFRRRYYKNGAHLGYILYSTDPDMDPQLEGLFRKKIEASKGAGNFKS
HHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
MFINIPGGDKEGVKVIPIGDSGTKDEFLNIKNVSAQDQLTAHRFPPGLAGIIPSNAGGLG
EEEECCCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHCCCCCCEEECCCCCCCCC
DPLKAREAYYRDEVIPLRRLIMEGVNAAPDIGGLGRVTFSLTFDDDAQIAQ
CCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1701261 [H]