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The map label for this gene is yrbE [H]

Identifier: 238920027

GI number: 238920027

Start: 2058567

End: 2059703

Strand: Reverse

Name: yrbE [H]

Synonym: NT01EI_2131

Alternate gene names: 238920027

Gene position: 2059703-2058567 (Counterclockwise)

Preceding gene: 238920028

Following gene: 238920026

Centisome position: 54.03

GC content: 60.33

Gene sequence:

>1137_bases
ATGATGAAAGAGGTACGCATTGGGTTAATCGGTACCGGCTACATTGGCAGGGCGCATGCCATTGCCTATGCCCAGGCGCC
GGTGGTGTTCAATCTACGCGGCAGGCTGGTGCGTGAAATGGTGGCGGAGGTCACCCCGACGCTGGCGGCAGAGCGGGCGC
AGGCCCTTGGCTTTAACCGCGCCACCGGCGACTGGCGTGCGCTGGTGGCCGACCCGAACGTCGATGTGGTGGACATCTGC
TCGCCGAACCATCTGCATAAAGAGATGGCGCTGGAGGCGATACATCACGGCAAACATGTCTACTCGGAAAAGCCGCTGGC
GCTCAATGCTGCTGATGCCCGTGAAATGGTTGATGCGGCACAGCGGGCCGGAGTGAAAACGCTGATCGGCTTCAACTACA
TGAAAAATCCAACGGCCAAACTGGCGAAAGAGATCATCTCCCGCGGGGAAATCGGTGAAGTGATCCACTTTTATGGAACC
CACAACGAAGACTATATGGCTGATCCGCAGGCCCCCATCCACTGGCACTGCTTTACGAAAACCGCCGGACTTGGCGCGCT
GGGCGACCTGGCCGCGCACATCGTCAACATGGCGCACTATCTGGTTGGCGATATCGAACAGGTCTGTGGCGATCTGAAAA
TTGTCGTGCCTGATCGCCCTGCGCATGCCGGTTCGTCGCAGAGGGTGGCGGTGGAAAACGAAGATCAGGCGCATGCGATG
GTGCGCTTCGCCAGCGGCGCGCTGGGGGTGATAGAAGCCTCACGGGTCGCCTGTGGGCGCAAGATGGGGCTGTCGTATCT
CATTACCGGCACCAAAGGCGCCATCCGTTTTACCCAGGAGCGGATGGCGGAGCTGCAGCTGTATCTGCATGAGGATCCGG
TGAGTCGTCAGGGTTTCCGCACGCTGCTGGTAGGGCCTGCGCACCCGGAGTACGCCGCGTTCTGTCTGGGAGCGGGACAC
GGTATCGGCTTTAACGATCAAAAAACGGTGGAGATCCGCGACCTGGTGAATGGCATCGCCGCCGATGCGCCCCTGTGGCC
GGATTTCGCCGAGGGTTGGAAGGTGTCGCGGGTGCTTGACGCTATCGCCCTCTCTCATCGCGAAGGCCGCTGGCTGAACG
TGACTGACATTGTTTGA

Upstream 100 bases:

>100_bases
CCGCCTACTACCAACAAATTATTACCGGGCTAATTATCATACTGGCCGTTGCCTTTGACACTTACGCCAAGAGCCGGCGC
GGCGCACTGTGAGGAGACGG

Downstream 100 bases:

>100_bases
CGAGGTATCAACGTGGAAAAGCAGTTTGATGTGATATGCATGGGGCGGGTCGCCGTTGATCTCTACAGCCAGCAGATTGG
CGCGAGGCTTGAAGATGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MMKEVRIGLIGTGYIGRAHAIAYAQAPVVFNLRGRLVREMVAEVTPTLAAERAQALGFNRATGDWRALVADPNVDVVDIC
SPNHLHKEMALEAIHHGKHVYSEKPLALNAADAREMVDAAQRAGVKTLIGFNYMKNPTAKLAKEIISRGEIGEVIHFYGT
HNEDYMADPQAPIHWHCFTKTAGLGALGDLAAHIVNMAHYLVGDIEQVCGDLKIVVPDRPAHAGSSQRVAVENEDQAHAM
VRFASGALGVIEASRVACGRKMGLSYLITGTKGAIRFTQERMAELQLYLHEDPVSRQGFRTLLVGPAHPEYAAFCLGAGH
GIGFNDQKTVEIRDLVNGIAADAPLWPDFAEGWKVSRVLDAIALSHREGRWLNVTDIV

Sequences:

>Translated_378_residues
MMKEVRIGLIGTGYIGRAHAIAYAQAPVVFNLRGRLVREMVAEVTPTLAAERAQALGFNRATGDWRALVADPNVDVVDIC
SPNHLHKEMALEAIHHGKHVYSEKPLALNAADAREMVDAAQRAGVKTLIGFNYMKNPTAKLAKEIISRGEIGEVIHFYGT
HNEDYMADPQAPIHWHCFTKTAGLGALGDLAAHIVNMAHYLVGDIEQVCGDLKIVVPDRPAHAGSSQRVAVENEDQAHAM
VRFASGALGVIEASRVACGRKMGLSYLITGTKGAIRFTQERMAELQLYLHEDPVSRQGFRTLLVGPAHPEYAAFCLGAGH
GIGFNDQKTVEIRDLVNGIAADAPLWPDFAEGWKVSRVLDAIALSHREGRWLNVTDIV
>Mature_378_residues
MMKEVRIGLIGTGYIGRAHAIAYAQAPVVFNLRGRLVREMVAEVTPTLAAERAQALGFNRATGDWRALVADPNVDVVDIC
SPNHLHKEMALEAIHHGKHVYSEKPLALNAADAREMVDAAQRAGVKTLIGFNYMKNPTAKLAKEIISRGEIGEVIHFYGT
HNEDYMADPQAPIHWHCFTKTAGLGALGDLAAHIVNMAHYLVGDIEQVCGDLKIVVPDRPAHAGSSQRVAVENEDQAHAM
VRFASGALGVIEASRVACGRKMGLSYLITGTKGAIRFTQERMAELQLYLHEDPVSRQGFRTLLVGPAHPEYAAFCLGAGH
GIGFNDQKTVEIRDLVNGIAADAPLWPDFAEGWKVSRVLDAIALSHREGRWLNVTDIV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=289, Percent_Identity=26.9896193771626, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787574, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081947, Length=274, Percent_Identity=23.3576642335766, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323975, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41185; Mature: 41185

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKEVRIGLIGTGYIGRAHAIAYAQAPVVFNLRGRLVREMVAEVTPTLAAERAQALGFNR
CCCCEEEEEEECCCCCHHHEEEEECCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
ATGDWRALVADPNVDVVDICSPNHLHKEMALEAIHHGKHVYSEKPLALNAADAREMVDAA
CCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHCCCCCCEEECHHHHHHHHHH
QRAGVKTLIGFNYMKNPTAKLAKEIISRGEIGEVIHFYGTHNEDYMADPQAPIHWHCFTK
HHCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEC
TAGLGALGDLAAHIVNMAHYLVGDIEQVCGDLKIVVPDRPAHAGSSQRVAVENEDQAHAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCHHHHH
VRFASGALGVIEASRVACGRKMGLSYLITGTKGAIRFTQERMAELQLYLHEDPVSRQGFR
HHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCCCCE
TLLVGPAHPEYAAFCLGAGHGIGFNDQKTVEIRDLVNGIAADAPLWPDFAEGWKVSRVLD
EEEECCCCCCHHEEEEECCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
AIALSHREGRWLNVTDIV
HHHHHCCCCCEEEHHCCC
>Mature Secondary Structure
MMKEVRIGLIGTGYIGRAHAIAYAQAPVVFNLRGRLVREMVAEVTPTLAAERAQALGFNR
CCCCEEEEEEECCCCCHHHEEEEECCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
ATGDWRALVADPNVDVVDICSPNHLHKEMALEAIHHGKHVYSEKPLALNAADAREMVDAA
CCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHCCCCCCEEECHHHHHHHHHH
QRAGVKTLIGFNYMKNPTAKLAKEIISRGEIGEVIHFYGTHNEDYMADPQAPIHWHCFTK
HHCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEC
TAGLGALGDLAAHIVNMAHYLVGDIEQVCGDLKIVVPDRPAHAGSSQRVAVENEDQAHAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCHHHHH
VRFASGALGVIEASRVACGRKMGLSYLITGTKGAIRFTQERMAELQLYLHEDPVSRQGFR
HHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCCCCE
TLLVGPAHPEYAAFCLGAGHGIGFNDQKTVEIRDLVNGIAADAPLWPDFAEGWKVSRVLD
EEEECCCCCCHHEEEEECCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
AIALSHREGRWLNVTDIV
HHHHHCCCCCEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]