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The map label for this gene is rbsC [H]

Identifier: 238920028

GI number: 238920028

Start: 2059712

End: 2060740

Strand: Reverse

Name: rbsC [H]

Synonym: NT01EI_2132

Alternate gene names: 238920028

Gene position: 2060740-2059712 (Counterclockwise)

Preceding gene: 238920029

Following gene: 238920027

Centisome position: 54.05

GC content: 59.18

Gene sequence:

>1029_bases
ATGACGCAGATGACGTCCAAAACGCCGACGCCGGTAACGCGTACGGGCCGGTTCGATCCCATCGCTTTCTTCGAGCGCTT
CGGGGTGCTGATTTTTATGATCCTGCTGCTGATTTTCTTTCAGTCGCAGAACGGCAATTTTTTCTCTGAGCGCAATATCG
TCAATATTCTGACCGAGGTATCCATCTACGGGATCATGGCGGTGGGGATGACGTTTGTCATCCTGACCGCAGGAATAGAC
CTGTCCGTCGGCTCCATCCTGGCGGTCTGCGCCATGACCGCGGCTTACGTTATCAAAGGTGACAACTTCACCACCGTTGA
TGTCAGCGCCTGGGGCGGCATGAGCTGGCTGATTGGGCTGGGGATCTGTCTGTCGATGGGTACGGTAATTGGTTTCCTGC
ATGGCCTCGGCGTGACCCGCCTGCGCCTGCCGCCGTTTATCGTCACCCTCGGCGGGATGACCATCTGGCGTGGGCTGACG
CTGGTGATTAACGACGGTGCGCCGATCGCCGGTTTTGATCCCGGTTACCGCTGGTGGGGGCGCGGCGAGCTGATCGGTAT
CTCTATTCCTATCTGGATCTTCGCACTGGTGGCCATTGGCGGCTATCTGGCGTTGCATAAAACACGCTGGGGCCGCTTTG
TGTATGCCATCGGCGGTAACCCGGAGGCCGCGCGCCTGGCCGGGGTCAACGTCAAACGCGTGCTGGTGAGCGTCTATGTG
CTGATCGGCTGCCTGGCAGGGCTGGCGGGGTTTATCCTCAGTGCGCGTCTGGGTAGCGCCGAGGCGGTCGCCGGGATCTC
GTTTGAGCTGCGCGTGATTGCCTCGGTGGTGATCGGCGGGACGTCGCTGATGGGCGGCTATGGCCGCATCGGCGGCACCA
TTATCGGCTCGATCATTATGGGTATCCTGATTAACGGTCTGGTGCTGATGAACGTGTCCGCCTACTACCAACAAATTATT
ACCGGGCTAATTATCATACTGGCCGTTGCCTTTGACACTTACGCCAAGAGCCGGCGCGGCGCACTGTGA

Upstream 100 bases:

>100_bases
GACGGGCGAAATTCACGGCGATGATGCCACCGAAGAGCGCCTCATGATGATGATGGCCATCAACCACAACGCCCTGAACG
CGGCATAACGGAGCTTCCTC

Downstream 100 bases:

>100_bases
GGAGACGGATGATGAAAGAGGTACGCATTGGGTTAATCGGTACCGGCTACATTGGCAGGGCGCATGCCATTGCCTATGCC
CAGGCGCCGGTGGTGTTCAA

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGID
LSVGSILAVCAMTAAYVIKGDNFTTVDVSAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLT
LVINDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII
TGLIIILAVAFDTYAKSRRGAL

Sequences:

>Translated_342_residues
MTQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGID
LSVGSILAVCAMTAAYVIKGDNFTTVDVSAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLT
LVINDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII
TGLIIILAVAFDTYAKSRRGAL
>Mature_341_residues
TQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDL
SVGSILAVCAMTAAYVIKGDNFTTVDVSAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTL
VINDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVL
IGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIIT
GLIIILAVAFDTYAKSRRGAL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=42.2839506172839, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=35.9516616314199, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI145693152, Length=336, Percent_Identity=34.5238095238095, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=33.5149863760218, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1788896, Length=336, Percent_Identity=31.8452380952381, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87082395, Length=300, Percent_Identity=38.6666666666667, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=36.3914373088685, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693214, Length=278, Percent_Identity=33.4532374100719, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1787793, Length=290, Percent_Identity=30.6896551724138, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787794, Length=282, Percent_Identity=27.6595744680851, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36431; Mature: 36300

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
SIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIKGDNFTTVDVSAWGGMSWLIGL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHHH
GICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYRWWG
HHHHHHHHHHHHHHHCCCCEEECCCCEEECCCHHHHCCEEEEEECCCCCCCCCCCCCCCC
RGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
CCCEEEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHEECCHHHHHHHHHHH
LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIM
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHH
GILINGLVLMNVSAYYQQIITGLIIILAVAFDTYAKSRRGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
SIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIKGDNFTTVDVSAWGGMSWLIGL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHHH
GICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYRWWG
HHHHHHHHHHHHHHHCCCCEEECCCCEEECCCHHHHCCEEEEEECCCCCCCCCCCCCCCC
RGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
CCCEEEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHEECCHHHHHHHHHHH
LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIM
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHH
GILINGLVLMNVSAYYQQIITGLIIILAVAFDTYAKSRRGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]