| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919917
Identifier: 238919917
GI number: 238919917
Start: 1948676
End: 1949458
Strand: Reverse
Name: 238919917
Synonym: NT01EI_2021
Alternate gene names: NA
Gene position: 1949458-1948676 (Counterclockwise)
Preceding gene: 238919921
Following gene: 238919916
Centisome position: 51.14
GC content: 57.98
Gene sequence:
>783_bases ATGACCATCTCTCACGCCTCAAACATTACCCGCCCTCCCAAAGTGTCGATCCACGATGGCAGGGCGGTGACAACTACCGA TGACGTCGCTGCCTATTTTGGTAAGCAAGCTCATCACGTCGTGCAAAAAGTAGAATCCCTTGATTGCTCAAAATATTTCA CCATCCGCAACTTTTCGCGGATGGTGAAAAATAAAGCGATAGGCAGTGGTGCTGAGCGCCAAGTGGTCTACTACGAGATG ACCAAAGACGGCTTCGTCTTTCTGGTCATGGGTTTCACCGGTAAGCGTGCCGCCGCGTTTAAAGAGGCCTATATCGCCGA GTTCAACCGCATGGAGAGGCAACTGCTCACCCGCCAGCAGGGCGCGTACTCAGCCCCTAAGCCACAGCCGCTCTGCGACG GGGAGATAAAAAACCTGAAATGGCTGATCGACTCCATCGTCAATCCGTTCCGGTTCCGCGCCGCCTGGAATCAGGGCGTC TGGTACGCGCTGCGTCAGGCCACCGGCGTGCCATCCCCATATCCCTTTACCGCCGCCGATTTGCCTGCACTGGCCCGCGA GCTGCAGCGCATCATGGAGATCAGCCATGAAACCCGCAGCCTGCTCCAGCAGCTTGAAAAGCAGGTGCTGCAGCAGGTGG TGCGTAACCGCGGCGAACTCCGTCCGGTATTGAACCATATTCAGCATGAGTTCCGGCAGCTGAGTCTGTTGGGGGAGACC CGCTCCCGGTTGAACAACGTCGAGCGGCAAAGCCTGGCCCGGCTGGAGCGGCGGGCAGGGTAG
Upstream 100 bases:
>100_bases CAATACCAGCAATGGGAATAAGCCCGCTTGCCGCTTGTACAAGTTTCTAGCACTCGGCCACCCGAGCCATTCGGGTATCC TCTAGAAAAGGATACAAGCT
Downstream 100 bases:
>100_bases TTTGGAGCGCCCGGTGGGGAGGACTGCCGGGCGTGGTAGTAAATGAATAGGGTGATAATCATTTGAGTTTGGCTGTTTCA TGCTTTAGTTTTAGATCTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTISHASNITRPPKVSIHDGRAVTTTDDVAAYFGKQAHHVVQKVESLDCSKYFTIRNFSRMVKNKAIGSGAERQVVYYEM TKDGFVFLVMGFTGKRAAAFKEAYIAEFNRMERQLLTRQQGAYSAPKPQPLCDGEIKNLKWLIDSIVNPFRFRAAWNQGV WYALRQATGVPSPYPFTAADLPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGET RSRLNNVERQSLARLERRAG
Sequences:
>Translated_260_residues MTISHASNITRPPKVSIHDGRAVTTTDDVAAYFGKQAHHVVQKVESLDCSKYFTIRNFSRMVKNKAIGSGAERQVVYYEM TKDGFVFLVMGFTGKRAAAFKEAYIAEFNRMERQLLTRQQGAYSAPKPQPLCDGEIKNLKWLIDSIVNPFRFRAAWNQGV WYALRQATGVPSPYPFTAADLPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGET RSRLNNVERQSLARLERRAG >Mature_259_residues TISHASNITRPPKVSIHDGRAVTTTDDVAAYFGKQAHHVVQKVESLDCSKYFTIRNFSRMVKNKAIGSGAERQVVYYEMT KDGFVFLVMGFTGKRAAAFKEAYIAEFNRMERQLLTRQQGAYSAPKPQPLCDGEIKNLKWLIDSIVNPFRFRAAWNQGVW YALRQATGVPSPYPFTAADLPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGETR SRLNNVERQSLARLERRAG
Specific function: Unknown
COG id: COG3646
COG function: function code S; Uncharacterized phage-encoded protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29759; Mature: 29627
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISHASNITRPPKVSIHDGRAVTTTDDVAAYFGKQAHHVVQKVESLDCSKYFTIRNFSR CCCCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH MVKNKAIGSGAERQVVYYEMTKDGFVFLVMGFTGKRAAAFKEAYIAEFNRMERQLLTRQQ HHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GAYSAPKPQPLCDGEIKNLKWLIDSIVNPFRFRAAWNQGVWYALRQATGVPSPYPFTAAD CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHH LPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH RSRLNNVERQSLARLERRAG HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TISHASNITRPPKVSIHDGRAVTTTDDVAAYFGKQAHHVVQKVESLDCSKYFTIRNFSR CCCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH MVKNKAIGSGAERQVVYYEMTKDGFVFLVMGFTGKRAAAFKEAYIAEFNRMERQLLTRQQ HHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GAYSAPKPQPLCDGEIKNLKWLIDSIVNPFRFRAAWNQGVWYALRQATGVPSPYPFTAAD CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHH LPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH RSRLNNVERQSLARLERRAG HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA