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The map label for this gene is oppB [H]

Identifier: 238919570

GI number: 238919570

Start: 1629731

End: 1630651

Strand: Direct

Name: oppB [H]

Synonym: NT01EI_1669

Alternate gene names: 238919570

Gene position: 1629731-1630651 (Clockwise)

Preceding gene: 238919569

Following gene: 238919571

Centisome position: 42.75

GC content: 56.35

Gene sequence:

>921_bases
ATGCTAAAATTTATACTCCGTCGCTTTCTGGAAGCGATTCCGACGCTTTTTATTCTGGTCACTATCTCGTTTTTTATGAT
GCGTCTGGCGCCGGGCAGCCCGTTTACCGGGGAACGCACGCTACCGCCGGAGGTGATGGCCAATATCGAAGCTAAATACC
ATCTCAACGACCCCATTTGGAAGCAGTATGGCCGCTATCTGCTGCAGCTCTCTAAGGGTGATTTTGGCCCCTCGTTTAAA
TATAAGGATTATTCGGTAAACGAGCTGGTTGCCGCCTCTTTTCCCGTTTCGGCCAAGCTGGGTTTTGCCGCCTTTTTCAT
GGCGGTTGTGTTGGGGGTCTCTGCCGGGGTCATTGCGGCCCTGAAGCAGAACTCGCGCTGGGACTATGTGGTGATGACCT
TTGCCATGACCGGGGTGGTGATCCCCAGCTTTGTGGTCGCGCCACTGCTGGTGCTGATCTTCGCCATCTCGCTGCACTGG
TTGCCGGGCGGCGGCTGGAACGGCGGAGCCCTGAAGTTCATACTGCTGCCGATGGTGGCACTCTCGCTTTCCTACATTGC
CGGTATCGCGCGCATTACCCGGGGATCGATGATCGAGGTGCTGCACTCTAACTTTATCCGTACCGCCCGGGCCAAGGGAC
TGCCGCTGCACCGCATTGTGCTGCGTCATGCGCTGCGCCCGGCGCTGCTGCCGGTGCTCTCCTACATGGGGCCTGCTTTT
GTCGGCATTATTACCGGCTCGATGGTCATTGAAACCATCTATGGCCTGCCGGGGATCGGCCAGTTGTTTGTCAATGGCGC
ACTGAACCGGGACTACTCACTGGTGCTCAGCCTGACGATCCTGGTAGGCACCCTGACGATTGTATTTAACGCTATCGTTG
ACGTGCTGTACGCCGTAATCGATCCCAAAATCCGTTACTGA

Upstream 100 bases:

>100_bases
AATCTTTATATCGTTCAACATTAATTGCTCGTCGTGCGGCCGGGAGACCGGCCGTCGGCGTGGCTGACAGCCTGCGAGGC
TGATGTACAGGGTTTGGGCT

Downstream 100 bases:

>100_bases
AAGAGGCGCCTATGTTAGTCAATAAAAACAGCGCCGCCGCGGTGAGCAGCTTCAGCGAACAGCTGGACGTGGAAGGGCGC
AGCCTGTGGCAGGATGCACG

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFILRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIWKQYGRYLLQLSKGDFGPSFK
YKDYSVNELVAASFPVSAKLGFAAFFMAVVLGVSAGVIAALKQNSRWDYVVMTFAMTGVVIPSFVVAPLLVLIFAISLHW
LPGGGWNGGALKFILLPMVALSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFILRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIWKQYGRYLLQLSKGDFGPSFK
YKDYSVNELVAASFPVSAKLGFAAFFMAVVLGVSAGVIAALKQNSRWDYVVMTFAMTGVVIPSFVVAPLLVLIFAISLHW
LPGGGWNGGALKFILLPMVALSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFILRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIWKQYGRYLLQLSKGDFGPSFK
YKDYSVNELVAASFPVSAKLGFAAFFMAVVLGVSAGVIAALKQNSRWDYVVMTFAMTGVVIPSFVVAPLLVLIFAISLHW
LPGGGWNGGALKFILLPMVALSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=89.8692810457516, Blast_Score=554, Evalue=1e-159,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.2750809061489, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=34.7058823529412, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.5161290322581, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=31.0126582278481, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787550, Length=331, Percent_Identity=27.4924471299094, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33612; Mature: 33612

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFILRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYGRYLLQLSKGDFGPSFKYKDYSVNELVAASFPVSAKLGFAAFFMAVVLGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNSRWDYVVMTFAMTGVVIPSFVVAPLLVLIFAISLHWLPGGGWNGGALKFILLPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFILRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYGRYLLQLSKGDFGPSFKYKDYSVNELVAASFPVSAKLGFAAFFMAVVLGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNSRWDYVVMTFAMTGVVIPSFVVAPLLVLIFAISLHWLPGGGWNGGALKFILLPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]