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The map label for this gene is oppA [H]

Identifier: 238919569

GI number: 238919569

Start: 1628020

End: 1629654

Strand: Direct

Name: oppA [H]

Synonym: NT01EI_1668

Alternate gene names: 238919569

Gene position: 1628020-1629654 (Clockwise)

Preceding gene: 238919568

Following gene: 238919570

Centisome position: 42.7

GC content: 53.76

Gene sequence:

>1635_bases
ATGAGCAAACACATCATTAAAAAAAGTATGTTAACCCTCGGTATTTTCAGCGCATTTGGCGTAGCGGTGGTAGCTCAGGC
TGCCGAGGTACCGGCCGGTGTACAGCTGGCTGCCAAACAGGAGCTGGTCAGAAATAATGGTTCGGAGGTCTCCTCCCTCG
ATCCGCACAAGATTGAAGGTGTGCCGGAAAACAACGTGACCAACGATCTGCTGGAGGGGCTGACGCAGCACGAGAGCCAG
GGGCAGACGATCCCCGGCGTGGCGCAGCGTTGGGAGAGCAAAGATAATAAAGTGTGGGTATTTTACCTGCGTCCGGATGC
TAAGTGGTCCAACGGTGACCCTGTCACCGCAGAGGACTTCGTCTATAGCTGGCAACGGATGGCCGATCCCAAGACCGCAT
CGCCCTACGCGAGCTACCTGCAGTATGCCCACGTTGCGAATATTGGTGACATCATCGCCGGCAAGCGGGATAAATCGGCT
CTGGGAGTCAAGGCACTGGATGATCATACATTCCAGGTCACTCTGAGCGAACCGGTTCCTTATCTACCGGAGATGACCGC
GCACTATGCGATGAAACCGGTCAATAAGGTGGCGGTCGAGAAGTTTGGTGACAAGTGGACCCTGCCGCAGAATTATGTCA
GCAATGGTGCCTATAAGCTGAAAGACTGGATCGTCAACGAGCGCATCGTGCTGGAGCGAAATCCGCAGTATTGGGACAAT
GCGAAGACGATCATCGATAAGGTAACCTTCCTGCCCATCGCATCGGAGGTGACCGATGTGAACCGCTATCGGGCCGGCGA
GATCGATATGACCTATAACAATATGCCGATCGAGCTGTTTCAGAAGCTGAAGAAGGAGATCCCCGAACAGGTGAAAGTGG
ATCCCTATCTGTGCACCTATTACTACGAGATCAATAATCAGAAGCCGCCGTTTAACGATCCCCGTGTGCGTGAGGCACTC
AAGCTGGGACTGGATCGCGATATTATTGTTAACAAAATCAAGAATCAGGGCGATCTGCCGGCATACAGCTTTACACCGCC
CTATACCGATGGTGCCGTGCTGACACAGCCGGCCTGGTTTGGCTGGTCGCAGGAGAAACGCAGCCAGGAGGCCAGGAAGT
TGCTGACTGAGGCGGGGTATGGCCCTGGTAAGCCGCTGACCTTTAATCTGCTCTACAACACCTCGGATCTGCATAAGAAG
CTGGCGATTGCCGCCGCCTCGATCTGGAAGAAAAACCTGGGGGTCGATGTGAAGCTGGAGAACCAGGAGTGGAAGACCTT
TCTCGATTCGCGCCATCAGGGGAACTATGATGTTTCCCGCGCCGGCTGGTGTGCCGACTATAATGAGCCGAGCTCATTCC
TCAATATGATGCTGTCGACCAGCAGTAATAATACCCCACACTATAAGAGCCCGGCCTTTGATCGCATTATGGCCAACGCC
CTGCAGGCGCCGGACAAGGCTGGCCGCGCAGCAGTCTACCAGCAGGCTGAGCAGCAGTTGGATCGCGATTCGGCTATCGT
TCCTGTCTATTACTACGTTAACGCCCGTCTGGTGAAACCTTTTGTCGGTGGCTATACCGGCAAGGATCCGCTGGATTATG
TCTACGACAAAAATCTTTATATCGTTCAACATTAA

Upstream 100 bases:

>100_bases
AGCTGCAGCGAATGAACCGTTCCTTCATTACCGCAGTGAATAAATAACGATGTTGACCTGCCTGCCCGCAGGCTTCCTTT
TGAATACGGGAGTGGTAGTA

Downstream 100 bases:

>100_bases
TTGCTCGTCGTGCGGCCGGGAGACCGGCCGTCGGCGTGGCTGACAGCCTGCGAGGCTGATGTACAGGGTTTGGGCTATGC
TAAAATTTATACTCCGTCGC

Product: periplasmic oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MSKHIIKKSMLTLGIFSAFGVAVVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEGVPENNVTNDLLEGLTQHESQ
GQTIPGVAQRWESKDNKVWVFYLRPDAKWSNGDPVTAEDFVYSWQRMADPKTASPYASYLQYAHVANIGDIIAGKRDKSA
LGVKALDDHTFQVTLSEPVPYLPEMTAHYAMKPVNKVAVEKFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDN
AKTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTYYYEINNQKPPFNDPRVREAL
KLGLDRDIIVNKIKNQGDLPAYSFTPPYTDGAVLTQPAWFGWSQEKRSQEARKLLTEAGYGPGKPLTFNLLYNTSDLHKK
LAIAAASIWKKNLGVDVKLENQEWKTFLDSRHQGNYDVSRAGWCADYNEPSSFLNMMLSTSSNNTPHYKSPAFDRIMANA
LQAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLYIVQH

Sequences:

>Translated_544_residues
MSKHIIKKSMLTLGIFSAFGVAVVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEGVPENNVTNDLLEGLTQHESQ
GQTIPGVAQRWESKDNKVWVFYLRPDAKWSNGDPVTAEDFVYSWQRMADPKTASPYASYLQYAHVANIGDIIAGKRDKSA
LGVKALDDHTFQVTLSEPVPYLPEMTAHYAMKPVNKVAVEKFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDN
AKTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTYYYEINNQKPPFNDPRVREAL
KLGLDRDIIVNKIKNQGDLPAYSFTPPYTDGAVLTQPAWFGWSQEKRSQEARKLLTEAGYGPGKPLTFNLLYNTSDLHKK
LAIAAASIWKKNLGVDVKLENQEWKTFLDSRHQGNYDVSRAGWCADYNEPSSFLNMMLSTSSNNTPHYKSPAFDRIMANA
LQAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLYIVQH
>Mature_543_residues
SKHIIKKSMLTLGIFSAFGVAVVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEGVPENNVTNDLLEGLTQHESQG
QTIPGVAQRWESKDNKVWVFYLRPDAKWSNGDPVTAEDFVYSWQRMADPKTASPYASYLQYAHVANIGDIIAGKRDKSAL
GVKALDDHTFQVTLSEPVPYLPEMTAHYAMKPVNKVAVEKFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDNA
KTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTYYYEINNQKPPFNDPRVREALK
LGLDRDIIVNKIKNQGDLPAYSFTPPYTDGAVLTQPAWFGWSQEKRSQEARKLLTEAGYGPGKPLTFNLLYNTSDLHKKL
AIAAASIWKKNLGVDVKLENQEWKTFLDSRHQGNYDVSRAGWCADYNEPSSFLNMMLSTSSNNTPHYKSPAFDRIMANAL
QAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLYIVQH

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=541, Percent_Identity=72.2735674676525, Blast_Score=837, Evalue=0.0,
Organism=Escherichia coli, GI87081878, Length=542, Percent_Identity=48.3394833948339, Blast_Score=520, Evalue=1e-148,
Organism=Escherichia coli, GI1789397, Length=519, Percent_Identity=44.1233140655106, Blast_Score=442, Evalue=1e-125,
Organism=Escherichia coli, GI1787762, Length=527, Percent_Identity=26.3757115749526, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1789887, Length=514, Percent_Identity=24.3190661478599, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789966, Length=487, Percent_Identity=23.6139630390144, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787052, Length=536, Percent_Identity=22.5746268656716, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787551, Length=463, Percent_Identity=24.8380129589633, Blast_Score=102, Evalue=7e-23,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61511; Mature: 61380

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHIIKKSMLTLGIFSAFGVAVVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCC
VPENNVTNDLLEGLTQHESQGQTIPGVAQRWESKDNKVWVFYLRPDAKWSNGDPVTAEDF
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH
VYSWQRMADPKTASPYASYLQYAHVANIGDIIAGKRDKSALGVKALDDHTFQVTLSEPVP
HHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEECCCEEEEEECCCCC
YLPEMTAHYAMKPVNKVAVEKFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEHHHHCCCEEEEECCCCCHHH
AKTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTY
HHHHHHHHHHEECHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCHHHCCCCEEEEE
YYEINNQKPPFNDPRVREALKLGLDRDIIVNKIKNQGDLPAYSFTPPYTDGAVLTQPAWF
EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCC
GWSQEKRSQEARKLLTEAGYGPGKPLTFNLLYNTSDLHKKLAIAAASIWKKNLGVDVKLE
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEC
NQEWKTFLDSRHQGNYDVSRAGWCADYNEPSSFLNMMLSTSSNNTPHYKSPAFDRIMANA
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LQAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLY
HCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCEEECHHHCCCCCCCCCHHEECCCEE
IVQH
EEEC
>Mature Secondary Structure 
SKHIIKKSMLTLGIFSAFGVAVVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCC
VPENNVTNDLLEGLTQHESQGQTIPGVAQRWESKDNKVWVFYLRPDAKWSNGDPVTAEDF
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH
VYSWQRMADPKTASPYASYLQYAHVANIGDIIAGKRDKSALGVKALDDHTFQVTLSEPVP
HHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEECCCEEEEEECCCCC
YLPEMTAHYAMKPVNKVAVEKFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEHHHHCCCEEEEECCCCCHHH
AKTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTY
HHHHHHHHHHEECHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCHHHCCCCEEEEE
YYEINNQKPPFNDPRVREALKLGLDRDIIVNKIKNQGDLPAYSFTPPYTDGAVLTQPAWF
EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCC
GWSQEKRSQEARKLLTEAGYGPGKPLTFNLLYNTSDLHKKLAIAAASIWKKNLGVDVKLE
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEC
NQEWKTFLDSRHQGNYDVSRAGWCADYNEPSSFLNMMLSTSSNNTPHYKSPAFDRIMANA
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LQAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLY
HCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCEEECHHHCCCCCCCCCHHEECCCEE
IVQH
EEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]