Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 238919571

GI number: 238919571

Start: 1630663

End: 1631571

Strand: Direct

Name: oppC [H]

Synonym: NT01EI_1670

Alternate gene names: 238919571

Gene position: 1630663-1631571 (Clockwise)

Preceding gene: 238919570

Following gene: 238919572

Centisome position: 42.77

GC content: 57.43

Gene sequence:

>909_bases
ATGTTAGTCAATAAAAACAGCGCCGCCGCGGTGAGCAGCTTCAGCGAACAGCTGGACGTGGAAGGGCGCAGCCTGTGGCA
GGATGCACGGCGCCGCTTTATGCATAACCGTGCGGCGCTGGTCAGCCTGTGTATTCTGTTTCTGATTGCCCTGTTTGTGA
TCTTCGCCCCGATGCTGTCGCCGTTTGCCTACGACGATACCGACTGGGGGATGATGTCGGCGGCGCCGGCGTTGGAGGGG
GGACACTATTTTGGTACCGACTCCTCCGGGCGCGATCTGCTGGTGCGTGTCGCCATTGGTGGACGTATTTCGCTGATGGT
CGGGATTGCCGCTGCGCTGGTGGCTGTGGTGGTCGGCACGCTGTACGGTGCGCTCTCCGGTTACCTGGGCGGTAAGGTGG
ACTCCGTGATGATGCGTATGCTGGAGATCCTCAACTCGTTTCCCTTTATGTTCTTCGTCATCCTGTTGGTGACCTTTTTT
GGCCAGAATATTTTGCTGATTTTTATCGCGATCGGCATGGTTTCCTGGTTGGACATGGCGCGTATTGTCCGCGGGCAGAC
GCTGAGTCTGAAGCGCAAGGAGTTTATCGAGGCGGCGCAGGTGGGAGGGGTAACGACGTGGCGTATTATTCTGCGCCACG
TGGTGCCCAACGTGCTGGGTGTGGTGGTGGTATATGCGTCGTTGCTGGTGCCGAGCATGATCCTGTTTGAATCGTTTCTG
AGTTTTCTGGGGCTGGGTACCCAAGAGCCGCTCAGCAGCTGGGGCGCCCTGCTGAGCGATGGGGCCAACTCGATGGAGGT
CTCTCCCTGGCTGCTGATCTTTCCGGCCTTTTTTCTGGTGATCACGCTGTTTTGTTTTAACTTTATCGGTGATGGGCTAC
GCGATGCCCTCGATCCGAAAGATCGTTGA

Upstream 100 bases:

>100_bases
TGACGATCCTGGTAGGCACCCTGACGATTGTATTTAACGCTATCGTTGACGTGCTGTACGCCGTAATCGATCCCAAAATC
CGTTACTGAAAGAGGCGCCT

Downstream 100 bases:

>100_bases
GGGGCATAGAGATGAAATCCGGTTTATTGAATGTACGCTCCTTGCGTGTGACCTTTGCAACGCCGGACGGCGACGTCACG
GCGGTCAACGACCTTAATTT

Product: oligopeptide transport system permease protein OppC

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILFLIALFVIFAPMLSPFAYDDTDWGMMSAAPALEG
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTLYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFF
GQNILLIFIAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVTTWRIILRHVVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPAFFLVITLFCFNFIGDGLRDALDPKDR

Sequences:

>Translated_302_residues
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILFLIALFVIFAPMLSPFAYDDTDWGMMSAAPALEG
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTLYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFF
GQNILLIFIAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVTTWRIILRHVVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPAFFLVITLFCFNFIGDGLRDALDPKDR
>Mature_302_residues
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILFLIALFVIFAPMLSPFAYDDTDWGMMSAAPALEG
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTLYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFF
GQNILLIFIAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVTTWRIILRHVVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPAFFLVITLFCFNFIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=87.4172185430464, Blast_Score=491, Evalue=1e-140,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=37.2759856630824, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=35.2490421455939, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1789964, Length=278, Percent_Identity=34.1726618705036, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1789889, Length=222, Percent_Identity=32.4324324324324, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=35.4545454545455, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1787549, Length=275, Percent_Identity=27.6363636363636, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33097; Mature: 33097

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILFLIALFVIFAPMLS
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PFAYDDTDWGMMSAAPALEGGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGT
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFFGQNILLIFIAIGMVSWLDMA
HHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLKRKEFIEAAQVGGVTTWRIILRHVVPNVLGVVVVYASLLVPSMILFESFL
HHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPAFFLVITLFCFNFIGDGLRDALDPK
HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC
>Mature Secondary Structure
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILFLIALFVIFAPMLS
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PFAYDDTDWGMMSAAPALEGGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGT
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFFGQNILLIFIAIGMVSWLDMA
HHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLKRKEFIEAAQVGGVTTWRIILRHVVPNVLGVVVVYASLLVPSMILFESFL
HHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPAFFLVITLFCFNFIGDGLRDALDPK
HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]