| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919465
Identifier: 238919465
GI number: 238919465
Start: 1520103
End: 1521239
Strand: Reverse
Name: 238919465
Synonym: NT01EI_1559
Alternate gene names: NA
Gene position: 1521239-1520103 (Counterclockwise)
Preceding gene: 238919466
Following gene: 238919462
Centisome position: 39.9
GC content: 60.25
Gene sequence:
>1137_bases ATGCACAGCGTATTACGCGCCACCCTGTTTACCCTGTCAGCCACGGTGCTTTGCGCCCCCCTGTCTGCCACCTCACTGCC CCAGGCAGAGATGGCCCAACGGGTCGACCACTTTAACCAGCGGATGCAGCTCGGTCAGCCATATGCCGCCGCTACCCAGC AGTTCCTGCACAGCGCCGCCTCGCTTTCCTCTGCGATCTTTCTGCGCCAGGCAGCAGAGGCGACCCCTTACTTTGTCGAC TGGATGAGCGGAACCCGTAAGGTCGCCGGTGACAACCCCTGGACCACCTACAACTCCGCCCTGTTTGACAGCCGCAGCGA CTACGTCATCAGTGGCAACGTCGGCGCGGCTGACTATGTGGGATTTCAGGTCTATGCGATGCGCGATGGCCGTAACATCG CCCGGACACAGCAGAACCGATCGACCCAGGATATGCAGATCGACCCGCAGGGTAACTTTAGCCTGCGCCTGACGCCGACG GCGCCCCCGCCGGGACAGGATACGATCGTCACCACACCGGATGACTATATGGTCATCGTGCGTGAGTATTATCACAGCGG ACAGCAAAAGGCCCAACGCCCTGCCCGCTATCAGATTCGCCGCCTGACGGGGCACCCCGTGCCGCCCATCGCCGATGCGG CGCAGCGCGGCGCGCAGGCAGCCAGCTTCTACCGTAGCCTGGTGCTCAGCTCTCTGGATATTTCCGCCAAGATGAGCAGG GTACGCAACAGCAGTCAGGAGGTTGAGGTCGATCGCAGTCTGTCCGATGCGCTGTACCCGACCACGGATAACCGCTATGA CGGCTTTTATGTTTCGCTGCCTCACGACGACAGCGTGATCCGTATCAGCGGCACCCTGCCCCGGGATGCAACCTATATCT CCGTCGTCTTCTATACGCCTTACTATATAACCCCAGACTATAGGATGGCCAAAACCTATCTGACCGGACAAGAGATTGTT CGTCAGGCGGACGGGAGCTACCAAATTCACCTGTCGCGCCAGCCACGCGGACTGAGCAACAACCTGACCAGTGCCGGCTA TGATCAGGGAATGGTGGTCATCCGCTATCTCGGCTCCCAGCAGTACCCCGAGTTTGACGTTCAGCTGTTGCCGCACGACG ATGAGGAGCGCCCATAA
Upstream 100 bases:
>100_bases GTTAAACCATTCCTATACGCCACACCGACATCCCGGTCGCTGCTTTGCACCCTGTGATAGGCTTTCAGCGCCGACTCCAC AGCCTGCAACGGATGCCATC
Downstream 100 bases:
>100_bases AAACGCCGCCCTTCCGGCGGCGTCTAAACGTTAATGGCACGTCGTTGTGTTAAGAAGGACGCTCGCGCGTTTTACGGGTA CAGCGTTTATCGTAGTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MHSVLRATLFTLSATVLCAPLSATSLPQAEMAQRVDHFNQRMQLGQPYAAATQQFLHSAASLSSAIFLRQAAEATPYFVD WMSGTRKVAGDNPWTTYNSALFDSRSDYVISGNVGAADYVGFQVYAMRDGRNIARTQQNRSTQDMQIDPQGNFSLRLTPT APPPGQDTIVTTPDDYMVIVREYYHSGQQKAQRPARYQIRRLTGHPVPPIADAAQRGAQAASFYRSLVLSSLDISAKMSR VRNSSQEVEVDRSLSDALYPTTDNRYDGFYVSLPHDDSVIRISGTLPRDATYISVVFYTPYYITPDYRMAKTYLTGQEIV RQADGSYQIHLSRQPRGLSNNLTSAGYDQGMVVIRYLGSQQYPEFDVQLLPHDDEERP
Sequences:
>Translated_378_residues MHSVLRATLFTLSATVLCAPLSATSLPQAEMAQRVDHFNQRMQLGQPYAAATQQFLHSAASLSSAIFLRQAAEATPYFVD WMSGTRKVAGDNPWTTYNSALFDSRSDYVISGNVGAADYVGFQVYAMRDGRNIARTQQNRSTQDMQIDPQGNFSLRLTPT APPPGQDTIVTTPDDYMVIVREYYHSGQQKAQRPARYQIRRLTGHPVPPIADAAQRGAQAASFYRSLVLSSLDISAKMSR VRNSSQEVEVDRSLSDALYPTTDNRYDGFYVSLPHDDSVIRISGTLPRDATYISVVFYTPYYITPDYRMAKTYLTGQEIV RQADGSYQIHLSRQPRGLSNNLTSAGYDQGMVVIRYLGSQQYPEFDVQLLPHDDEERP >Mature_378_residues MHSVLRATLFTLSATVLCAPLSATSLPQAEMAQRVDHFNQRMQLGQPYAAATQQFLHSAASLSSAIFLRQAAEATPYFVD WMSGTRKVAGDNPWTTYNSALFDSRSDYVISGNVGAADYVGFQVYAMRDGRNIARTQQNRSTQDMQIDPQGNFSLRLTPT APPPGQDTIVTTPDDYMVIVREYYHSGQQKAQRPARYQIRRLTGHPVPPIADAAQRGAQAASFYRSLVLSSLDISAKMSR VRNSSQEVEVDRSLSDALYPTTDNRYDGFYVSLPHDDSVIRISGTLPRDATYISVVFYTPYYITPDYRMAKTYLTGQEIV RQADGSYQIHLSRQPRGLSNNLTSAGYDQGMVVIRYLGSQQYPEFDVQLLPHDDEERP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42317; Mature: 42317
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSVLRATLFTLSATVLCAPLSATSLPQAEMAQRVDHFNQRMQLGQPYAAATQQFLHSAA CCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SLSSAIFLRQAAEATPYFVDWMSGTRKVAGDNPWTTYNSALFDSRSDYVISGNVGAADYV HHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCHHHHCCCCCEEEECCCCCCCEE GFQVYAMRDGRNIARTQQNRSTQDMQIDPQGNFSLRLTPTAPPPGQDTIVTTPDDYMVIV EEEEEEEECCCHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCCCCEEECCCCCEEHH REYYHSGQQKAQRPARYQIRRLTGHPVPPIADAAQRGAQAASFYRSLVLSSLDISAKMSR HHHHHCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH VRNSSQEVEVDRSLSDALYPTTDNRYDGFYVSLPHDDSVIRISGTLPRDATYISVVFYTP HHCCCHHEEHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECC YYITPDYRMAKTYLTGQEIVRQADGSYQIHLSRQPRGLSNNLTSAGYDQGMVVIRYLGSQ EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC QYPEFDVQLLPHDDEERP CCCCCCEEECCCCCCCCC >Mature Secondary Structure MHSVLRATLFTLSATVLCAPLSATSLPQAEMAQRVDHFNQRMQLGQPYAAATQQFLHSAA CCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SLSSAIFLRQAAEATPYFVDWMSGTRKVAGDNPWTTYNSALFDSRSDYVISGNVGAADYV HHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCHHHHCCCCCEEEECCCCCCCEE GFQVYAMRDGRNIARTQQNRSTQDMQIDPQGNFSLRLTPTAPPPGQDTIVTTPDDYMVIV EEEEEEEECCCHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCCCCEEECCCCCEEHH REYYHSGQQKAQRPARYQIRRLTGHPVPPIADAAQRGAQAASFYRSLVLSSLDISAKMSR HHHHHCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH VRNSSQEVEVDRSLSDALYPTTDNRYDGFYVSLPHDDSVIRISGTLPRDATYISVVFYTP HHCCCHHEEHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECC YYITPDYRMAKTYLTGQEIVRQADGSYQIHLSRQPRGLSNNLTSAGYDQGMVVIRYLGSQ EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC QYPEFDVQLLPHDDEERP CCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA