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The map label for this gene is arnD [H]

Identifier: 238919325

GI number: 238919325

Start: 1404184

End: 1405083

Strand: Direct

Name: arnD [H]

Synonym: NT01EI_1416

Alternate gene names: 238919325

Gene position: 1404184-1405083 (Clockwise)

Preceding gene: 238919324

Following gene: 238919326

Centisome position: 36.83

GC content: 62.44

Gene sequence:

>900_bases
ATGAAACGGGTTGGTCTGCGCATTGACGTAGACACCTGGCGCGGCACGCGTGATGGCGTGCCGGCGCTGGTGTCGCTGCT
GCGCCGGCACGGGATCCGGGCGACGTTCTTTTTTACTTTGGGTCCGGATAATATGGGGCGCCACCTGTGGCGCCTGCTGA
AGCCGCGCTTTCTGTGGAAAATGCTGCGCTCTGATGCCGCATCGCTGTATGGCTGGGATATTTTGCTGGCCGGAACGGCC
TGGCCCGGACGCCGGATCGGCGCCGGTCTGGCCAGTACCATCGCCGCCGCTGCCAAAGAGCATGAGACCGGGCTGCACGC
CTGGGATCACCATGCCTGGCAGGCCTGGGCCGGCGTTTGGTCACGGGAGAAGATGGCCGAGCAGATCGGGCTGGCCTATG
ATGAGCTGCAGCTGATCACCGGGGAGAGTATCAGTTGCTCCGCGGTTGCCGGCTGGCGCGCCGATGCCCGGGTGGTCGAG
GCCAAAGAGCCTTTTGGCTTTCGCTATAACAGCGATTGCCGCGGTACACATCCGTTTCGCCCGCTGCTGCCGGATGGCCG
CCTGGGGACGGTACAGATCCCGGTGACCCAGCCAACCTGGGATGAGGCTATCGGCATCATGACCGATGAGGCGGGGTTTA
ACCGTTTCATTCTCGACAGCATCCTGGCCGATCGTGGCGTGCCGGTTTACACCATTCACGCCGAAGTTGAAGGCATTGCC
AAACAGGCGCAGTTTGCCCGCCTGCTGGAGATGGCGCGTGAGGCACAGATTGAATTTTGCCCCCTCGGGGATTTATTGCC
AGATGATATTACGCTGTTGCCGTGCGGGAGAGTCGTTCGCGCGACGCTGAGCGGGCGTGAGGGATGGCTGGGTTGTCAGC
AGGAGATGGAGTCACCATGA

Upstream 100 bases:

>100_bases
CACAGCGTCTGCTGGGCTGGCAGCCGGTGATCCCGATGGAGAGCACTATCGAGGATACCCTGGACTTCTTCCTGCAGACC
TTTGACGGTACGGAGCAGGA

Downstream 100 bases:

>100_bases
AGAAGATCGCAGGATGGTTTACGCTGGCTGTACTGTTTGTCCTTTATTACATCGTTCCGCTGCCGGGACGTTTATTATGG
CAGCCGGATGAAACCCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKRVGLRIDVDTWRGTRDGVPALVSLLRRHGIRATFFFTLGPDNMGRHLWRLLKPRFLWKMLRSDAASLYGWDILLAGTA
WPGRRIGAGLASTIAAAAKEHETGLHAWDHHAWQAWAGVWSREKMAEQIGLAYDELQLITGESISCSAVAGWRADARVVE
AKEPFGFRYNSDCRGTHPFRPLLPDGRLGTVQIPVTQPTWDEAIGIMTDEAGFNRFILDSILADRGVPVYTIHAEVEGIA
KQAQFARLLEMAREAQIEFCPLGDLLPDDITLLPCGRVVRATLSGREGWLGCQQEMESP

Sequences:

>Translated_299_residues
MKRVGLRIDVDTWRGTRDGVPALVSLLRRHGIRATFFFTLGPDNMGRHLWRLLKPRFLWKMLRSDAASLYGWDILLAGTA
WPGRRIGAGLASTIAAAAKEHETGLHAWDHHAWQAWAGVWSREKMAEQIGLAYDELQLITGESISCSAVAGWRADARVVE
AKEPFGFRYNSDCRGTHPFRPLLPDGRLGTVQIPVTQPTWDEAIGIMTDEAGFNRFILDSILADRGVPVYTIHAEVEGIA
KQAQFARLLEMAREAQIEFCPLGDLLPDDITLLPCGRVVRATLSGREGWLGCQQEMESP
>Mature_299_residues
MKRVGLRIDVDTWRGTRDGVPALVSLLRRHGIRATFFFTLGPDNMGRHLWRLLKPRFLWKMLRSDAASLYGWDILLAGTA
WPGRRIGAGLASTIAAAAKEHETGLHAWDHHAWQAWAGVWSREKMAEQIGLAYDELQLITGESISCSAVAGWRADARVVE
AKEPFGFRYNSDCRGTHPFRPLLPDGRLGTVQIPVTQPTWDEAIGIMTDEAGFNRFILDSILADRGVPVYTIHAEVEGIA
KQAQFARLLEMAREAQIEFCPLGDLLPDDITLLPCGRVVRATLSGREGWLGCQQEMESP

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=294, Percent_Identity=62.2448979591837, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33341; Mature: 33341

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVGLRIDVDTWRGTRDGVPALVSLLRRHGIRATFFFTLGPDNMGRHLWRLLKPRFLWK
CCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSDAASLYGWDILLAGTAWPGRRIGAGLASTIAAAAKEHETGLHAWDHHAWQAWAGVW
HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SREKMAEQIGLAYDELQLITGESISCSAVAGWRADARVVEAKEPFGFRYNSDCRGTHPFR
HHHHHHHHHCCCHHHEEEECCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCC
PLLPDGRLGTVQIPVTQPTWDEAIGIMTDEAGFNRFILDSILADRGVPVYTIHAEVEGIA
CCCCCCCCCEEEEECCCCCHHHHHEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHH
KQAQFARLLEMAREAQIEFCPLGDLLPDDITLLPCGRVVRATLSGREGWLGCQQEMESP
HHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKRVGLRIDVDTWRGTRDGVPALVSLLRRHGIRATFFFTLGPDNMGRHLWRLLKPRFLWK
CCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSDAASLYGWDILLAGTAWPGRRIGAGLASTIAAAAKEHETGLHAWDHHAWQAWAGVW
HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SREKMAEQIGLAYDELQLITGESISCSAVAGWRADARVVEAKEPFGFRYNSDCRGTHPFR
HHHHHHHHHCCCHHHEEEECCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCC
PLLPDGRLGTVQIPVTQPTWDEAIGIMTDEAGFNRFILDSILADRGVPVYTIHAEVEGIA
CCCCCCCCCEEEEECCCCCHHHHHEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHH
KQAQFARLLEMAREAQIEFCPLGDLLPDDITLLPCGRVVRATLSGREGWLGCQQEMESP
HHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA