| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919275
Identifier: 238919275
GI number: 238919275
Start: 1354069
End: 1355346
Strand: Direct
Name: 238919275
Synonym: NT01EI_1365
Alternate gene names: NA
Gene position: 1354069-1355346 (Clockwise)
Preceding gene: 238919274
Following gene: 238919276
Centisome position: 35.52
GC content: 58.53
Gene sequence:
>1278_bases ATGGCTCTACTCTCTCTGTTTTCTCTCTTTACCATTATTGCGCTGGGGTTCTGGCGTAAAGTGAACGTAGGCCTGCTGGC GATCGCCATGGTGGTGATCCTTGGCTATGGCAGCAGTCAGTTCAGCGAGCGCGAGTTAATCAGCGGCTTCAGTACCTCTC TCTTTATTACCCTGTTAGGCGTCACCCTGTTTTTTAGCGTCGTGCAAAACAGCGGTGCGCTGGAAGTGGTGATGAAGAAC GTTGTACGGCGCATCGGCGGGCGTATTTATCTGGTGCCGGTGGCGATGTTTGTGATGGGCTATGTGCTGTCGGCCATCGG GCCGGGCTGTGTCCCGGCGCTGGCCTTTGTGGCGGTGATCGCCGTGCCGCTGTCGCACCGTACCGGTTATAACAGCATTA TGCTGATGCTGATCGGTGACGTCGCCACCTATAGCGGGCGCTTCTCGATGATCACCCCCGAGGGGGTGCTGGTGACCCAA CTGATGTCCCAGTCCGGCATCGAGATCAATCTGGTGCAGATGATGCTGAACACCGGCATCGGCGCCGGGGTGCTGGCGCT GATTTTCTTCTTTGCCTACGGCGGTCACCGGGTGCGCGCCTTTAGCGGAGGGAACGCCGACGGCGGCGCCGGGGTCGACA GCTTTTCCCGGATAAACCCGCTGAGTACCCAGCAGAAAGTGGTGCTGCTCTCGATTGTGCTGATGGTGCTGTGCGTGGTG CTGTTTAACATGAATGTAGGGCTGGCGTCGTTTCTGATGACGGTGCTGCTGCTACTGGCGCGGGTAGAAAACGAAAAATC CGCCATCAGCTGTATTCCCTGGCCGACCCTGATCATGGTCGGCGGCGTCGGTATGCTGATGAATCTGGTCAGTAAGTCCG GCGGCATCGATATTATCATCGGCACCATCAATCAGATCTCTACCCCCGCCACCCTGATCACCGTAACCGGTGCGGTGACC GGTATCATGAGCTGGTTCTCCTCCACCATTGGCGTGGTACTGCCCACCATGCTGCCGACGGTCGCCTCGTTGATCGGCAG CAGCGATGGCGCCATTTCGGCGATCGAGCTGGTCAGCGTGATCGGCATTATCTCCTCTACGGCAGGGTTCAGCCCGGTAT CGACCGTCGGCGCCCTGATCATGTCGGCCAATGAGAGCGACTCGGCGCAAAACAAGATCCCGCAGGCGCGGCTGTTTATC ACCCTGTTCCTCTGGTCCCTCTTCTGTGTGGTTTTCCTCAGCCTGCTGGCCTGGCTGGGCGTGTTCGGCCTGTTTTAA
Upstream 100 bases:
>100_bases CTCTGTATTAATCGCTTTTCTGCGGTGTGGCTTTCTGCACGCTGAATTTATGGCGACGCTGCACCATGGCCCGATACGGA GACCGTCGGAGGCAACACCC
Downstream 100 bases:
>100_bases GTAATTCCAGTAACGGGAGTCAATCGTATGGATATCACCGCAATGCGGCGTATGACCCGGCAGATCCGTGCAGACATTGT GCGGATGATCCACCAGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Dicarboxylate Carrier Protein; Dicarboxylate Carrier MatC Domain Protein; Dicarboxylate-Carrier Protein; Carrier Protein; Gram-Positive Signal Peptide YSIRK Family; Citrate Transporter; Transmembrane Dicarboxylate Carrier Protein; Integral Membrane Protein; Na+/H+ Antiporter NhaD-Like Permease; Dicarboxylate Carrier Protein MatC; Membrane Associated Dicarboxylate Carrier Protein
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MALLSLFSLFTIIALGFWRKVNVGLLAIAMVVILGYGSSQFSERELISGFSTSLFITLLGVTLFFSVVQNSGALEVVMKN VVRRIGGRIYLVPVAMFVMGYVLSAIGPGCVPALAFVAVIAVPLSHRTGYNSIMLMLIGDVATYSGRFSMITPEGVLVTQ LMSQSGIEINLVQMMLNTGIGAGVLALIFFFAYGGHRVRAFSGGNADGGAGVDSFSRINPLSTQQKVVLLSIVLMVLCVV LFNMNVGLASFLMTVLLLLARVENEKSAISCIPWPTLIMVGGVGMLMNLVSKSGGIDIIIGTINQISTPATLITVTGAVT GIMSWFSSTIGVVLPTMLPTVASLIGSSDGAISAIELVSVIGIISSTAGFSPVSTVGALIMSANESDSAQNKIPQARLFI TLFLWSLFCVVFLSLLAWLGVFGLF
Sequences:
>Translated_425_residues MALLSLFSLFTIIALGFWRKVNVGLLAIAMVVILGYGSSQFSERELISGFSTSLFITLLGVTLFFSVVQNSGALEVVMKN VVRRIGGRIYLVPVAMFVMGYVLSAIGPGCVPALAFVAVIAVPLSHRTGYNSIMLMLIGDVATYSGRFSMITPEGVLVTQ LMSQSGIEINLVQMMLNTGIGAGVLALIFFFAYGGHRVRAFSGGNADGGAGVDSFSRINPLSTQQKVVLLSIVLMVLCVV LFNMNVGLASFLMTVLLLLARVENEKSAISCIPWPTLIMVGGVGMLMNLVSKSGGIDIIIGTINQISTPATLITVTGAVT GIMSWFSSTIGVVLPTMLPTVASLIGSSDGAISAIELVSVIGIISSTAGFSPVSTVGALIMSANESDSAQNKIPQARLFI TLFLWSLFCVVFLSLLAWLGVFGLF >Mature_424_residues ALLSLFSLFTIIALGFWRKVNVGLLAIAMVVILGYGSSQFSERELISGFSTSLFITLLGVTLFFSVVQNSGALEVVMKNV VRRIGGRIYLVPVAMFVMGYVLSAIGPGCVPALAFVAVIAVPLSHRTGYNSIMLMLIGDVATYSGRFSMITPEGVLVTQL MSQSGIEINLVQMMLNTGIGAGVLALIFFFAYGGHRVRAFSGGNADGGAGVDSFSRINPLSTQQKVVLLSIVLMVLCVVL FNMNVGLASFLMTVLLLLARVENEKSAISCIPWPTLIMVGGVGMLMNLVSKSGGIDIIIGTINQISTPATLITVTGAVTG IMSWFSSTIGVVLPTMLPTVASLIGSSDGAISAIELVSVIGIISSTAGFSPVSTVGALIMSANESDSAQNKIPQARLFIT LFLWSLFCVVFLSLLAWLGVFGLF
Specific function: Unknown
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44767; Mature: 44636
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLSLFSLFTIIALGFWRKVNVGLLAIAMVVILGYGSSQFSERELISGFSTSLFITLLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH VTLFFSVVQNSGALEVVMKNVVRRIGGRIYLVPVAMFVMGYVLSAIGPGCVPALAFVAVI HHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AVPLSHRTGYNSIMLMLIGDVATYSGRFSMITPEGVLVTQLMSQSGIEINLVQMMLNTGI HHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCC GAGVLALIFFFAYGGHRVRAFSGGNADGGAGVDSFSRINPLSTQQKVVLLSIVLMVLCVV CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH LFNMNVGLASFLMTVLLLLARVENEKSAISCIPWPTLIMVGGVGMLMNLVSKSGGIDIII HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEE GTINQISTPATLITVTGAVTGIMSWFSSTIGVVLPTMLPTVASLIGSSDGAISAIELVSV ECCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH IGIISSTAGFSPVSTVGALIMSANESDSAQNKIPQARLFITLFLWSLFCVVFLSLLAWLG HHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFGLF HHCCC >Mature Secondary Structure ALLSLFSLFTIIALGFWRKVNVGLLAIAMVVILGYGSSQFSERELISGFSTSLFITLLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH VTLFFSVVQNSGALEVVMKNVVRRIGGRIYLVPVAMFVMGYVLSAIGPGCVPALAFVAVI HHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AVPLSHRTGYNSIMLMLIGDVATYSGRFSMITPEGVLVTQLMSQSGIEINLVQMMLNTGI HHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCC GAGVLALIFFFAYGGHRVRAFSGGNADGGAGVDSFSRINPLSTQQKVVLLSIVLMVLCVV CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH LFNMNVGLASFLMTVLLLLARVENEKSAISCIPWPTLIMVGGVGMLMNLVSKSGGIDIII HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEE GTINQISTPATLITVTGAVTGIMSWFSSTIGVVLPTMLPTVASLIGSSDGAISAIELVSV ECCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH IGIISSTAGFSPVSTVGALIMSANESDSAQNKIPQARLFITLFLWSLFCVVFLSLLAWLG HHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFGLF HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA