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The map label for this gene is ybhD [H]

Identifier: 238919273

GI number: 238919273

Start: 1352362

End: 1353261

Strand: Direct

Name: ybhD [H]

Synonym: NT01EI_1363

Alternate gene names: 238919273

Gene position: 1352362-1353261 (Clockwise)

Preceding gene: 238919272

Following gene: 238919274

Centisome position: 35.47

GC content: 61.78

Gene sequence:

>900_bases
ATGAGTAATCCTTTGCAACGTATCGATGTGAAAACCATCGCCCTGTTTTGCCTGATTGCAGATAACCACTCCATGTCAAA
GACCGCCGAGCTGATGCATATGACGCCGTCGGCCGTCAGCAAACGGATCCATGAGCTGGAGAGCATTACGCAGCTGACGC
TGTTCCAGCGCCTGCCCGGGAAGATGGCGCTGACCCGCGAGGGAGAGGCCCTGCTGCGCGAGGCGGGGTATCTGGTGGGC
AGCCTGGATCGCCTGTGGGGGACGGTACAGCGCCTGCGTCAGCGTCAGCGCCATCAGGTTCGCCTGCTGGCCAATACCTC
GTCTATTATTCAGTTTCTGTCGCGCGATATCAGCACCTTTCTCCATCAGCACCCGGACGTCGGCATCATGCTGACAGAAA
CCGACAGCGACGACGTCAGGCGGGCGCTGGTGGAGAACCGCGCCGATATCGGCATCTATTTTGCCGCCGCGGCCGCCGTA
GGGCTGGAGGGGGGAGCCTATAACGCCGATCGCCTGGTGCTGCTGGTGGCCGAGACGCATCCCCTGGCCTCGCAGCAGCG
GGTGTGGTTTGCCAGCGCGCTGGACTACAGCTTTGTGACCTTCAACCTCAACAGCGCCATCTATAAGTGTATCGCTGCCC
AGGCGCAGCTGGCCGGGCGGGATCTGAATGTGACCATGCGCAGCAACGACTTCAGCGCCATCAGTCAGATGGTGAGATCC
GGGATCGGCGTCGGCATACTGCCGGCGCAGACGCTGGATCAGGTCGGACTGCGTCAGCAGGGGATCCGCGCCATCGCACT
GCGCGATGAGTGGGCGGAAAGGGTGCTGTATGTCTCCATCAGCCAGGAGGCGCAGGCGCTGCCGGCGGCGCGGATGCTGT
ATAGCTACCTGTTGAAATAG

Upstream 100 bases:

>100_bases
CGGGAAATAGTGCTGGGCGCACGGCGGCGATGGGGCTTATATAGCGGAGATGATGCCGGGGATTCTCCCCGGTACGGATA
TATACCGATGCGAGGTGACG

Downstream 100 bases:

>100_bases
CCGGGAGCTCCCCGGGGAATATCCACGGGCGGCGTGCGCTGGTTTCCATTATGGAATCGATGATGGCGTAAAATTCCTTT
GCCTGCGTCTGGCGCGGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSNPLQRIDVKTIALFCLIADNHSMSKTAELMHMTPSAVSKRIHELESITQLTLFQRLPGKMALTREGEALLREAGYLVG
SLDRLWGTVQRLRQRQRHQVRLLANTSSIIQFLSRDISTFLHQHPDVGIMLTETDSDDVRRALVENRADIGIYFAAAAAV
GLEGGAYNADRLVLLVAETHPLASQQRVWFASALDYSFVTFNLNSAIYKCIAAQAQLAGRDLNVTMRSNDFSAISQMVRS
GIGVGILPAQTLDQVGLRQQGIRAIALRDEWAERVLYVSISQEAQALPAARMLYSYLLK

Sequences:

>Translated_299_residues
MSNPLQRIDVKTIALFCLIADNHSMSKTAELMHMTPSAVSKRIHELESITQLTLFQRLPGKMALTREGEALLREAGYLVG
SLDRLWGTVQRLRQRQRHQVRLLANTSSIIQFLSRDISTFLHQHPDVGIMLTETDSDDVRRALVENRADIGIYFAAAAAV
GLEGGAYNADRLVLLVAETHPLASQQRVWFASALDYSFVTFNLNSAIYKCIAAQAQLAGRDLNVTMRSNDFSAISQMVRS
GIGVGILPAQTLDQVGLRQQGIRAIALRDEWAERVLYVSISQEAQALPAARMLYSYLLK
>Mature_298_residues
SNPLQRIDVKTIALFCLIADNHSMSKTAELMHMTPSAVSKRIHELESITQLTLFQRLPGKMALTREGEALLREAGYLVGS
LDRLWGTVQRLRQRQRHQVRLLANTSSIIQFLSRDISTFLHQHPDVGIMLTETDSDDVRRALVENRADIGIYFAAAAAVG
LEGGAYNADRLVLLVAETHPLASQQRVWFASALDYSFVTFNLNSAIYKCIAAQAQLAGRDLNVTMRSNDFSAISQMVRSG
IGVGILPAQTLDQVGLRQQGIRAIALRDEWAERVLYVSISQEAQALPAARMLYSYLLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=22.4137931034483, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI157672245, Length=264, Percent_Identity=24.2424242424242, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=22.7118644067797, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789204, Length=250, Percent_Identity=20.8, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33269; Mature: 33138

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPLQRIDVKTIALFCLIADNHSMSKTAELMHMTPSAVSKRIHELESITQLTLFQRLPG
CCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
KMALTREGEALLREAGYLVGSLDRLWGTVQRLRQRQRHQVRLLANTSSIIQFLSRDISTF
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHH
LHQHPDVGIMLTETDSDDVRRALVENRADIGIYFAAAAAVGLEGGAYNADRLVLLVAETH
HHCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
PLASQQRVWFASALDYSFVTFNLNSAIYKCIAAQAQLAGRDLNVTMRSNDFSAISQMVRS
CCCCCCHHHEEHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC
GIGVGILPAQTLDQVGLRQQGIRAIALRDEWAERVLYVSISQEAQALPAARMLYSYLLK
CCCCCCCCHHHHHHHCHHHHCCEEEEEHHHHHCEEEEEEECCHHHHCHHHHHHHHHHCC
>Mature Secondary Structure 
SNPLQRIDVKTIALFCLIADNHSMSKTAELMHMTPSAVSKRIHELESITQLTLFQRLPG
CCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
KMALTREGEALLREAGYLVGSLDRLWGTVQRLRQRQRHQVRLLANTSSIIQFLSRDISTF
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHH
LHQHPDVGIMLTETDSDDVRRALVENRADIGIYFAAAAAVGLEGGAYNADRLVLLVAETH
HHCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
PLASQQRVWFASALDYSFVTFNLNSAIYKCIAAQAQLAGRDLNVTMRSNDFSAISQMVRS
CCCCCCHHHEEHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC
GIGVGILPAQTLDQVGLRQQGIRAIALRDEWAERVLYVSISQEAQALPAARMLYSYLLK
CCCCCCCCHHHHHHHCHHHHCCEEEEEHHHHHCEEEEEEECCHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]