| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919179
Identifier: 238919179
GI number: 238919179
Start: 1242264
End: 1242929
Strand: Direct
Name: 238919179
Synonym: NT01EI_1250
Alternate gene names: NA
Gene position: 1242264-1242929 (Clockwise)
Preceding gene: 238919178
Following gene: 238919180
Centisome position: 32.59
GC content: 63.21
Gene sequence:
>666_bases ATGGCATTGGGGCCGATAGATATGGCGGGCGGTTTGTCGTCGCAGGCGCACAGCGGTGGACAGCTGAGCGTAGAGTTGTT GGATGCGCGCATCGAACGGCTGCTGCAGGTGTTAAACCGAGGCGATTTAACCCCGTCACAGCGTGAAAATACGCTGCGTG CCCTGACGGCGCTGCAGCGTGAGCGTACGCTGCTGCAAGCATTTAGCCAGGGCGAGCCGAGCCCGGCCGCCGCCGCGGGA CGGGAGTCTCCGCAGGCCACCGCCCACCGGGGAACCGCGGCGTCGATGGGACAGCCGGTATCGTGGGTCACCCTGGGAGA GCACAGTCGCATGCTATCGGAGAGGGCCAACGTCGAACGGGCACTGGAGGTCAAAGAGGGGGCTGATAAGCTGTTTTCAT CCCTGGACAAGTCGACGCTGCAGACCGAGCCGCTGCGTTCACCGCTGGAAAATCAGGTGATCGTTGCCAGCCAGCTGGCT GTACCGCCCGAAGGGACCGAAGACGATCCGCTGCCGGTGACATCGGTGCTCAATCCCCAGCCGGTCTTTGGCTTTATCCC GGCGCAGTGGATCCCGGGAAGTGTTCGCGCGCAGGCCCGCTCACCGGCTACGTTGCTACTGATCGGGATTGTGATGCTGC TCATGGTGATCCTGCTGACATGGTAG
Upstream 100 bases:
>100_bases GTGAGCAGACAGAGGGCTGCGTTGATGGGATAGGTTAAAGTTGACGTGCATTTGCGCCGTTATATATCCCGATAGGGCAG CAATCAGTGGAGAGGAACGT
Downstream 100 bases:
>100_bases CAAAGCGATACTGCACGGCGCGGCGGGCGGCGATAGCCTGTTGCGCAGGATTGCATACAGAGCACACGCGTAACGTTTGC AGTGGATAAAGATCAAGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MALGPIDMAGGLSSQAHSGGQLSVELLDARIERLLQVLNRGDLTPSQRENTLRALTALQRERTLLQAFSQGEPSPAAAAG RESPQATAHRGTAASMGQPVSWVTLGEHSRMLSERANVERALEVKEGADKLFSSLDKSTLQTEPLRSPLENQVIVASQLA VPPEGTEDDPLPVTSVLNPQPVFGFIPAQWIPGSVRAQARSPATLLLIGIVMLLMVILLTW
Sequences:
>Translated_221_residues MALGPIDMAGGLSSQAHSGGQLSVELLDARIERLLQVLNRGDLTPSQRENTLRALTALQRERTLLQAFSQGEPSPAAAAG RESPQATAHRGTAASMGQPVSWVTLGEHSRMLSERANVERALEVKEGADKLFSSLDKSTLQTEPLRSPLENQVIVASQLA VPPEGTEDDPLPVTSVLNPQPVFGFIPAQWIPGSVRAQARSPATLLLIGIVMLLMVILLTW >Mature_220_residues ALGPIDMAGGLSSQAHSGGQLSVELLDARIERLLQVLNRGDLTPSQRENTLRALTALQRERTLLQAFSQGEPSPAAAAGR ESPQATAHRGTAASMGQPVSWVTLGEHSRMLSERANVERALEVKEGADKLFSSLDKSTLQTEPLRSPLENQVIVASQLAV PPEGTEDDPLPVTSVLNPQPVFGFIPAQWIPGSVRAQARSPATLLLIGIVMLLMVILLTW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23665; Mature: 23534
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGPIDMAGGLSSQAHSGGQLSVELLDARIERLLQVLNRGDLTPSQRENTLRALTALQR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ERTLLQAFSQGEPSPAAAAGRESPQATAHRGTAASMGQPVSWVTLGEHSRMLSERANVER HHHHHHHHHCCCCCCHHHCCCCCCCHHHHCCCHHHCCCCCEEEEECHHHHHHHHHHHHHH ALEVKEGADKLFSSLDKSTLQTEPLRSPLENQVIVASQLAVPPEGTEDDPLPVTSVLNPQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEHHCCCCCCCCCCCCCCHHHCCCCC PVFGFIPAQWIPGSVRAQARSPATLLLIGIVMLLMVILLTW CCEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ALGPIDMAGGLSSQAHSGGQLSVELLDARIERLLQVLNRGDLTPSQRENTLRALTALQR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ERTLLQAFSQGEPSPAAAAGRESPQATAHRGTAASMGQPVSWVTLGEHSRMLSERANVER HHHHHHHHHCCCCCCHHHCCCCCCCHHHHCCCHHHCCCCCEEEEECHHHHHHHHHHHHHH ALEVKEGADKLFSSLDKSTLQTEPLRSPLENQVIVASQLAVPPEGTEDDPLPVTSVLNPQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEHHCCCCCCCCCCCCCCHHHCCCCC PVFGFIPAQWIPGSVRAQARSPATLLLIGIVMLLMVILLTW CCEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA