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The map label for this gene is yabD [H]

Identifier: 238917940

GI number: 238917940

Start: 2097432

End: 2098238

Strand: Reverse

Name: yabD [H]

Synonym: EUBELI_02028

Alternate gene names: 238917940

Gene position: 2098238-2097432 (Counterclockwise)

Preceding gene: 238917941

Following gene: 238917938

Centisome position: 97.86

GC content: 42.75

Gene sequence:

>807_bases
ATGAAGATATTTGAAACTCATGCTCATTATGATGATGAAAGATTTGATGAGGACAGAGATGAACTTATAAGCAGCATGCT
TAGTGATACAGGGGAGCTTGATTACATTGTTAATGTAGGTGCAAGCCGTCAGGGCTGTGAGGCTTCCCTTGCACTTGCTG
CACAATATGAAAAGGTATATGCAGCGATTGGTTTCCACCCGGAGGATATTGTCAGATTGAAAGAATCGGACATTGAATGG
CTGGAAAACATGCTTGGTGAATCTAAGGCAAGAAAGATTGTTGCGCTTGGAGAAATCGGACTTGATTACTACTATGTGTC
AGATGATGCAGATATGGCGGCGGCTGAGAAGAAGCAGCAGCGTGAATGGTTTGCAGCACAGATGAATATAGCGTACCGTA
CACACATGCCGGTAATGATTCATTCAAGAGATGCATGTCAGGATACAATCGACATATTAAAGAGTAATCACGGACAGGAT
ACAGGCGGAATAATCCACTGTTATTCATACAGTAAGGAAGCAGCAAGAGACTTTCTTAATATGGGCTTCTCTATAGGAAT
CGGCGGTGTTCTTACATTTAAGAATGCTAAGAAGCTTGTGGAAGCAGCCGCGTATATACCGATGGATAGAATTGTTCTTG
AGACAGACAGTCCATATATGGCACCTGAGCCTAACCGAGGTAAAAGAAACGACAGCCGCAATATAAAATATGTTGCAGAA
AAGCTGGCGCAGATTAAAGGGCTTGATACGCAGGAGGTTATTGATGTTACTAACCAGAATGCGAGAAGGCTGCTTTTTGG
GGAGTAA

Upstream 100 bases:

>100_bases
CACAGGGAATGATTATCTCAGCATGGGATGATAAGGATAACTTATCAGTTCTTACACTTGAGAAAGATATTATTGAAGGT
GCAGAGATTGGCTGATAGAT

Downstream 100 bases:

>100_bases
GGTTTCGAGGACTTTGCCGGCAGGACAGCCCTTTTCTTGTGTAAACTGGGCTGAAACATATAAATTATAATAAAACTGCT
ATTTAGTAGGTCTTTTAACG

Product: Mg-dependent DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKIFETHAHYDDERFDEDRDELISSMLSDTGELDYIVNVGASRQGCEASLALAAQYEKVYAAIGFHPEDIVRLKESDIEW
LENMLGESKARKIVALGEIGLDYYYVSDDADMAAAEKKQQREWFAAQMNIAYRTHMPVMIHSRDACQDTIDILKSNHGQD
TGGIIHCYSYSKEAARDFLNMGFSIGIGGVLTFKNAKKLVEAAAYIPMDRIVLETDSPYMAPEPNRGKRNDSRNIKYVAE
KLAQIKGLDTQEVIDVTNQNARRLLFGE

Sequences:

>Translated_268_residues
MKIFETHAHYDDERFDEDRDELISSMLSDTGELDYIVNVGASRQGCEASLALAAQYEKVYAAIGFHPEDIVRLKESDIEW
LENMLGESKARKIVALGEIGLDYYYVSDDADMAAAEKKQQREWFAAQMNIAYRTHMPVMIHSRDACQDTIDILKSNHGQD
TGGIIHCYSYSKEAARDFLNMGFSIGIGGVLTFKNAKKLVEAAAYIPMDRIVLETDSPYMAPEPNRGKRNDSRNIKYVAE
KLAQIKGLDTQEVIDVTNQNARRLLFGE
>Mature_268_residues
MKIFETHAHYDDERFDEDRDELISSMLSDTGELDYIVNVGASRQGCEASLALAAQYEKVYAAIGFHPEDIVRLKESDIEW
LENMLGESKARKIVALGEIGLDYYYVSDDADMAAAEKKQQREWFAAQMNIAYRTHMPVMIHSRDACQDTIDILKSNHGQD
TGGIIHCYSYSKEAARDFLNMGFSIGIGGVLTFKNAKKLVEAAAYIPMDRIVLETDSPYMAPEPNRGKRNDSRNIKYVAE
KLAQIKGLDTQEVIDVTNQNARRLLFGE

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=276, Percent_Identity=28.2608695652174, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI226061853, Length=284, Percent_Identity=28.5211267605634, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI110349730, Length=277, Percent_Identity=28.158844765343, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI226061614, Length=275, Percent_Identity=26.5454545454545, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI225903439, Length=253, Percent_Identity=23.7154150197628, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI14042943, Length=253, Percent_Identity=23.7154150197628, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI225903424, Length=166, Percent_Identity=32.5301204819277, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI226061595, Length=242, Percent_Identity=25.6198347107438, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1787342, Length=268, Percent_Identity=33.955223880597, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI87082439, Length=265, Percent_Identity=28.3018867924528, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI48994985, Length=271, Percent_Identity=25.4612546125461, Blast_Score=108, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=259, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=27.4436090225564, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565396, Length=251, Percent_Identity=27.4900398406374, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=216, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24586117, Length=266, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221330018, Length=266, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648690, Length=233, Percent_Identity=27.4678111587983, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30262; Mature: 30262

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFETHAHYDDERFDEDRDELISSMLSDTGELDYIVNVGASRQGCEASLALAAQYEKVY
CCEECCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
AAIGFHPEDIVRLKESDIEWLENMLGESKARKIVALGEIGLDYYYVSDDADMAAAEKKQQ
HHHCCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEECCCCEEEEECCCCHHHHHHHHHH
REWFAAQMNIAYRTHMPVMIHSRDACQDTIDILKSNHGQDTGGIIHCYSYSKEAARDFLN
HHHHHHHHCEEEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
MGFSIGIGGVLTFKNAKKLVEAAAYIPMDRIVLETDSPYMAPEPNRGKRNDSRNIKYVAE
CCHHCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
KLAQIKGLDTQEVIDVTNQNARRLLFGE
HHHHHCCCCHHHHHHHCCCCCCEECCCC
>Mature Secondary Structure
MKIFETHAHYDDERFDEDRDELISSMLSDTGELDYIVNVGASRQGCEASLALAAQYEKVY
CCEECCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
AAIGFHPEDIVRLKESDIEWLENMLGESKARKIVALGEIGLDYYYVSDDADMAAAEKKQQ
HHHCCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEECCCCEEEEECCCCHHHHHHHHHH
REWFAAQMNIAYRTHMPVMIHSRDACQDTIDILKSNHGQDTGGIIHCYSYSKEAARDFLN
HHHHHHHHCEEEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
MGFSIGIGGVLTFKNAKKLVEAAAYIPMDRIVLETDSPYMAPEPNRGKRNDSRNIKYVAE
CCHHCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
KLAQIKGLDTQEVIDVTNQNARRLLFGE
HHHHHCCCCHHHHHHHCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]