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The map label for this gene is yneF [H]

Identifier: 238917938

GI number: 238917938

Start: 2095124

End: 2096152

Strand: Reverse

Name: yneF [H]

Synonym: EUBELI_02026

Alternate gene names: 238917938

Gene position: 2096152-2095124 (Counterclockwise)

Preceding gene: 238917940

Following gene: 238917937

Centisome position: 97.76

GC content: 32.17

Gene sequence:

>1029_bases
ATGAGCATTAATAAAAAAGAATTTAATCTGGAGCAGGTTGTTAAACTATGCGTGGTTGTTAACATATCGTTGTTTTTATT
TGTTGCATTTATGCTGACATTATTTGTATATTTTAATATAACACCAATGATTTATTACAGTGTAATAGCACTGATTGGTT
ATGTGTTATATTTTATGCTGTTAAAAAGGCAGAAAGTGTGTGCATATATGTGGTGTGTGTATGCAACAATTATAATTTAT
ATGGCTATTGCAACAATATGTCTTGGGTATAAATGTGGATTTCATCTGTATAGCATGTCATTAATACCTATAATATTTTA
TTCACAATACATATCAACCAAGACCGATACAAAAGACCCGAATCCACTGGCTGTGTCGATAGCAATAGTTGCTGTAAGTA
TAATATCATCAGCAATAGCTATAATTAACGGACCATTGTATGAAATTAATAAAACAATTATATCTGTGATGCTTGCATGT
AATGCAATAAGTGTATCAGCATTTTTAATATATTATACTAAGGTGATAGTCGATCTTGTTATTGAGTCTGAGAAGAAGCT
TAATTCAATTGCCAACATTGATCTTCTGACAGACCTTTACAGCAGAAGATATATGATTAATTATCTTGAAGAATATGATG
CGGACGATGAAGGCTGGCTTGCAATGGCAGATGTAGATGATTTCAAGAAAATAAATGATACATATGGACATAACTGTGGT
GATTATGTGTTAAATTTCATTGCACAGAAGATGAAAAATATATGCAGTAACTGTGTGATTTCAAGGTGGGGCGGAGAAGA
ATTTCTTATACATAATGGAACACACGACAGCACACATGAAGTATTAGAAAAATTGAGGAGAGAAATAGAAAACTCTGAAT
GTATTTATAAACAGCAGAAGATAAATATATCACTAACAATAGGAGTGGCGCAGAGAAATGCCGATGGTGATATAGAAGAA
TGGATAAAGAGTGCAGATGACAGGCTTTATTACGGAAAAAATAACGGAAAGAATATGGTGGTAGATTAA

Upstream 100 bases:

>100_bases
ATAAAAAATGTCAAGCTGCAATAAAAATGTAGTGCAAAAGTAACTTTTGTATGATACTATAGTACTACTTACAATCGAGA
ACATATTATCAGGAGATATC

Downstream 100 bases:

>100_bases
GATAAAACCTCCCTGATGGAATATTTTCTTAATGCATGGCATAAGGTGCATAAGAGAATTAATTATGGCGGAGGTTTATT
GTGGATTATCAGCGTCTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSINKKEFNLEQVVKLCVVVNISLFLFVAFMLTLFVYFNITPMIYYSVIALIGYVLYFMLLKRQKVCAYMWCVYATIIIY
MAIATICLGYKCGFHLYSMSLIPIIFYSQYISTKTDTKDPNPLAVSIAIVAVSIISSAIAIINGPLYEINKTIISVMLAC
NAISVSAFLIYYTKVIVDLVIESEKKLNSIANIDLLTDLYSRRYMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCG
DYVLNFIAQKMKNICSNCVISRWGGEEFLIHNGTHDSTHEVLEKLRREIENSECIYKQQKINISLTIGVAQRNADGDIEE
WIKSADDRLYYGKNNGKNMVVD

Sequences:

>Translated_342_residues
MSINKKEFNLEQVVKLCVVVNISLFLFVAFMLTLFVYFNITPMIYYSVIALIGYVLYFMLLKRQKVCAYMWCVYATIIIY
MAIATICLGYKCGFHLYSMSLIPIIFYSQYISTKTDTKDPNPLAVSIAIVAVSIISSAIAIINGPLYEINKTIISVMLAC
NAISVSAFLIYYTKVIVDLVIESEKKLNSIANIDLLTDLYSRRYMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCG
DYVLNFIAQKMKNICSNCVISRWGGEEFLIHNGTHDSTHEVLEKLRREIENSECIYKQQKINISLTIGVAQRNADGDIEE
WIKSADDRLYYGKNNGKNMVVD
>Mature_341_residues
SINKKEFNLEQVVKLCVVVNISLFLFVAFMLTLFVYFNITPMIYYSVIALIGYVLYFMLLKRQKVCAYMWCVYATIIIYM
AIATICLGYKCGFHLYSMSLIPIIFYSQYISTKTDTKDPNPLAVSIAIVAVSIISSAIAIINGPLYEINKTIISVMLACN
AISVSAFLIYYTKVIVDLVIESEKKLNSIANIDLLTDLYSRRYMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCGD
YVLNFIAQKMKNICSNCVISRWGGEEFLIHNGTHDSTHEVLEKLRREIENSECIYKQQKINISLTIGVAQRNADGDIEEW
IKSADDRLYYGKNNGKNMVVD

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787802, Length=225, Percent_Identity=27.5555555555556, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=35.6687898089172, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=30.635838150289, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=32.9479768786127, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=36.0248447204969, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=123, Percent_Identity=36.5853658536585, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=30.5194805194805, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39074; Mature: 38943

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00018 EF_HAND_1 ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINKKEFNLEQVVKLCVVVNISLFLFVAFMLTLFVYFNITPMIYYSVIALIGYVLYFML
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRQKVCAYMWCVYATIIIYMAIATICLGYKCGFHLYSMSLIPIIFYSQYISTKTDTKDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPLAVSIAIVAVSIISSAIAIINGPLYEINKTIISVMLACNAISVSAFLIYYTKVIVDLV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IESEKKLNSIANIDLLTDLYSRRYMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHH
DYVLNFIAQKMKNICSNCVISRWGGEEFLIHNGTHDSTHEVLEKLRREIENSECIYKQQK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHE
INISLTIGVAQRNADGDIEEWIKSADDRLYYGKNNGKNMVVD
EEEEEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCEECCC
>Mature Secondary Structure 
SINKKEFNLEQVVKLCVVVNISLFLFVAFMLTLFVYFNITPMIYYSVIALIGYVLYFML
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRQKVCAYMWCVYATIIIYMAIATICLGYKCGFHLYSMSLIPIIFYSQYISTKTDTKDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPLAVSIAIVAVSIISSAIAIINGPLYEINKTIISVMLACNAISVSAFLIYYTKVIVDLV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IESEKKLNSIANIDLLTDLYSRRYMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHH
DYVLNFIAQKMKNICSNCVISRWGGEEFLIHNGTHDSTHEVLEKLRREIENSECIYKQQK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHE
INISLTIGVAQRNADGDIEEWIKSADDRLYYGKNNGKNMVVD
EEEEEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]