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The map label for this gene is yhaM [H]

Identifier: 238917770

GI number: 238917770

Start: 1913383

End: 1914327

Strand: Reverse

Name: yhaM [H]

Synonym: EUBELI_01851

Alternate gene names: 238917770

Gene position: 1914327-1913383 (Counterclockwise)

Preceding gene: 238917771

Following gene: 238917769

Centisome position: 89.28

GC content: 38.2

Gene sequence:

>945_bases
ATGCGTTATATAGAGACTCTTAAAGATGGTGAGAGAATTTCAGAGGTATATCTGTGCAAATCAAAATCAATAGCACTTAC
TAAGACAGGCAAGGAATATGCCAATGTAATGCTTGCTGATAAGACAGGACAGATTGACTCTAAGATATGGGACCTTAATT
CAGGCGGAATTGCTGAATTTGATGTTAATGATTATGTTGCGGTAACAGGACAGGTAACAAGCTATAACGGAGCATTACAG
TTTAAGATAGAGAGAGCAAGAATTGCATCAGAGAATGAATATGTTGCAGCAGATTATGTACCATCTTCAAGATATAATAT
TGATAATATGTTTGCAGAACTGATGAAGTATGTAGACAGTGTTAAGAGTACATATATGAAGCAGCTGTTATATTCTTTCT
TTAAAGATGAAGCATTTGCAAAGAAGTTCAAATGTGTATCAGCAGCCAAGACAGTACATCATGGTTTCGCTGGCGGATTG
TTAGAGCACAGCTTAAGTGTTACAAGATTATGTGACAAGATGAGCAGCAACTATGATTTTCTTAACAGGGATCTGCTTAT
AACATGTGCAATGCTGCATGATGTCGGCAAGGTTAAGGAATTATCTGAATTTCCTAAGAATGATTACACTGACGAGGGTA
ATTTCTTAGGACATATCGTTATTGGATATGAGATGGTTATGGAGAAGGTTAAGCAGATAGACGGATTCCCTGATATGCTT
GCAATGCAGATTGGACACTGCATACTTTCACATCACGGAGAGCTTGAGTACGGCTCACCTAAGAAGCCATCAATAGCAGA
GGCTGTCGCATTATCTATGGCTGATAATATGGATGCAAAGCTTGAGACACTAAGAGAAGCGCTTGAAGCCAAGGATACCA
ACGACTGGCTTGGTTATAACAGATGGCTTGATTCTAATATAAGAAGGACAACTAATGAGTTTTAA

Upstream 100 bases:

>100_bases
ATGTGACAGCTATGAGGCAGGGAAAAGATGGCTATTCAGATGTAGCATTTTCAGTAAGTGTACAGCTAAAACAACTTAAT
TAACGGAGGCAGAAGGATTT

Downstream 100 bases:

>100_bases
GAAAGATGATAAAGTAACATTTGTAATAGAAGATATAGGAACCGGAGGAGAGGGTATCGGCAAGGTTGACGGATATACTC
TCTTTGTTAAGGATGCGATA

Product: CMP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRYIETLKDGERISEVYLCKSKSIALTKTGKEYANVMLADKTGQIDSKIWDLNSGGIAEFDVNDYVAVTGQVTSYNGALQ
FKIERARIASENEYVAADYVPSSRYNIDNMFAELMKYVDSVKSTYMKQLLYSFFKDEAFAKKFKCVSAAKTVHHGFAGGL
LEHSLSVTRLCDKMSSNYDFLNRDLLITCAMLHDVGKVKELSEFPKNDYTDEGNFLGHIVIGYEMVMEKVKQIDGFPDML
AMQIGHCILSHHGELEYGSPKKPSIAEAVALSMADNMDAKLETLREALEAKDTNDWLGYNRWLDSNIRRTTNEF

Sequences:

>Translated_314_residues
MRYIETLKDGERISEVYLCKSKSIALTKTGKEYANVMLADKTGQIDSKIWDLNSGGIAEFDVNDYVAVTGQVTSYNGALQ
FKIERARIASENEYVAADYVPSSRYNIDNMFAELMKYVDSVKSTYMKQLLYSFFKDEAFAKKFKCVSAAKTVHHGFAGGL
LEHSLSVTRLCDKMSSNYDFLNRDLLITCAMLHDVGKVKELSEFPKNDYTDEGNFLGHIVIGYEMVMEKVKQIDGFPDML
AMQIGHCILSHHGELEYGSPKKPSIAEAVALSMADNMDAKLETLREALEAKDTNDWLGYNRWLDSNIRRTTNEF
>Mature_314_residues
MRYIETLKDGERISEVYLCKSKSIALTKTGKEYANVMLADKTGQIDSKIWDLNSGGIAEFDVNDYVAVTGQVTSYNGALQ
FKIERARIASENEYVAADYVPSSRYNIDNMFAELMKYVDSVKSTYMKQLLYSFFKDEAFAKKFKCVSAAKTVHHGFAGGL
LEHSLSVTRLCDKMSSNYDFLNRDLLITCAMLHDVGKVKELSEFPKNDYTDEGNFLGHIVIGYEMVMEKVKQIDGFPDML
AMQIGHCILSHHGELEYGSPKKPSIAEAVALSMADNMDAKLETLREALEAKDTNDWLGYNRWLDSNIRRTTNEF

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35523; Mature: 35523

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYIETLKDGERISEVYLCKSKSIALTKTGKEYANVMLADKTGQIDSKIWDLNSGGIAEF
CCHHHHHCCHHHHHHHHEECCCCEEEEECCHHHHCEEEECCCCCCCCCEEECCCCCEEEE
DVNDYVAVTGQVTSYNGALQFKIERARIASENEYVAADYVPSSRYNIDNMFAELMKYVDS
CCCCEEEEEEEEEECCCEEEEEEEHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VKSTYMKQLLYSFFKDEAFAKKFKCVSAAKTVHHGFAGGLLEHSLSVTRLCDKMSSNYDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LNRDLLITCAMLHDVGKVKELSEFPKNDYTDEGNFLGHIVIGYEMVMEKVKQIDGFPDML
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
AMQIGHCILSHHGELEYGSPKKPSIAEAVALSMADNMDAKLETLREALEAKDTNDWLGYN
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
RWLDSNIRRTTNEF
HHHHCHHHHHCCCC
>Mature Secondary Structure
MRYIETLKDGERISEVYLCKSKSIALTKTGKEYANVMLADKTGQIDSKIWDLNSGGIAEF
CCHHHHHCCHHHHHHHHEECCCCEEEEECCHHHHCEEEECCCCCCCCCEEECCCCCEEEE
DVNDYVAVTGQVTSYNGALQFKIERARIASENEYVAADYVPSSRYNIDNMFAELMKYVDS
CCCCEEEEEEEEEECCCEEEEEEEHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VKSTYMKQLLYSFFKDEAFAKKFKCVSAAKTVHHGFAGGLLEHSLSVTRLCDKMSSNYDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LNRDLLITCAMLHDVGKVKELSEFPKNDYTDEGNFLGHIVIGYEMVMEKVKQIDGFPDML
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
AMQIGHCILSHHGELEYGSPKKPSIAEAVALSMADNMDAKLETLREALEAKDTNDWLGYN
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
RWLDSNIRRTTNEF
HHHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA