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The map label for this gene is xylR [H]

Identifier: 238897034

GI number: 238897034

Start: 5026806

End: 5027984

Strand: Direct

Name: xylR [H]

Synonym: KP1_5281

Alternate gene names: 238897034

Gene position: 5026806-5027984 (Clockwise)

Preceding gene: 238897033

Following gene: 238897036

Centisome position: 95.78

GC content: 57.85

Gene sequence:

>1179_bases
ATGTTTGAAAAGCGTCACCGTATTACGCTGTTATTTAACGCCAACAAAGCTTATGACCGCCAGGTAGTTGAAGGTGTCGG
CGAGTATCTGCAGGCCTCCCAGTTGGAGTGGGATATCTTTATTGAAGAGGACTTTCGGGCACGCATCGAAAACATCAAAG
AGTGGTTGGGCGATGGCGTTATCGCCGACTATGACGATCCCGAAATCGAAAAGCTGCTGGCCGATGTCCACGTGCCCATC
GTCGGCGTCGGCGGATCTTATCATCAGCCAGAGCAGTACCCGCCGGTCCACTATATCGCCACCGACAACGCCGCGCTGGT
GGAAAGCGCTTTTCTCCATTTGAAGGAAAAAGGGGTGCACCGCTTCGCGTTTTATGGACTCCCCGCCTCCAGCGGTAAAC
GCTGGGCGGTAGAGCGCGAGTATGCCTTCTGCCAGCTGGTCGCGAAGGAGAAGTATCGCGGCGTGGTCTACCAGGGGCTG
GAGACAGCGCCGGAGAACTGGCAGCACGCGCAAAACCGGCTCGCCGACTGGCTGCAAACCCTGCCGCCGCAAACCGGCAT
CATCGCCGTCACCGACGCCCGCGCCCGCCACGTCCTGCAGGCCTGCGAGCTGCTGCATATCCCGGTGCCAGAGAAACTGT
GCGTTATCGGCATCGATAACGAGGAGCTAACCCGCTATCTCTCTCGCGTCGCCCTCTCCTCTGTCGCCCAGGGCACCCGC
CAGATGGGTTATCAGGCGGCAAAATTACTCCACCGGCTGTTGAATAACGAGGCCCTCCCGCTGCAGCGCCAGCTGATCCC
GCCGATGCGCGTCGTTGAGCGACGCTCCACCGACTACCGGTCGTTAAACGATCCCTCCGTGATACAGGCGATGCATTACA
TTCGCAACAATGCCTGCAAAGGCATCAAGGTGGAACAGGTGCTCGACGCCGTGGGCATCTCTCGCTCTAATCTGGAAAAA
CGCTTCAAAGAGGAGGTCGGGGAGACCATCCACACGGTGATCCACAGCGAAAAACTGGAAAAGGCGCGCAGCCTGCTGGT
GTCCACTAGTCTGTCGATCAATGAGATTTCGCAGATGTGCGGCTATCCGTCGCTGCAATATTTCTATTCGGTGTTTAAGA
AGGAGTACGACGTGACGCCGAAGGAGTACCGCGATCGGCACAGCGAGGTGATGCTGTAG

Upstream 100 bases:

>100_bases
CCGCGTACCGGCGTACGTGGCCGGGATGAGTGGTAAGTCAGGCCATCGGCAACATCTTGAATGAAGGGGTATGACCGGGG
TTAGAGCAGGAACATTATCT

Downstream 100 bases:

>100_bases
GGTAAAAAAATGCCCGGCGACAAGGCCGGGCATCCGGATTACAGATGGGCGGCGATGAGCCGCTGATTGTCCTGATACAT
CGCGAAGAGATAGTTGTTGT

Product: putative regulator of xyl operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFEKRHRITLLFNANKAYDRQVVEGVGEYLQASQLEWDIFIEEDFRARIENIKEWLGDGVIADYDDPEIEKLLADVHVPI
VGVGGSYHQPEQYPPVHYIATDNAALVESAFLHLKEKGVHRFAFYGLPASSGKRWAVEREYAFCQLVAKEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACELLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYQAAKLLHRLLNNEALPLQRQLIPPMRVVERRSTDYRSLNDPSVIQAMHYIRNNACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHTVIHSEKLEKARSLLVSTSLSINEISQMCGYPSLQYFYSVFKKEYDVTPKEYRDRHSEVML

Sequences:

>Translated_392_residues
MFEKRHRITLLFNANKAYDRQVVEGVGEYLQASQLEWDIFIEEDFRARIENIKEWLGDGVIADYDDPEIEKLLADVHVPI
VGVGGSYHQPEQYPPVHYIATDNAALVESAFLHLKEKGVHRFAFYGLPASSGKRWAVEREYAFCQLVAKEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACELLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYQAAKLLHRLLNNEALPLQRQLIPPMRVVERRSTDYRSLNDPSVIQAMHYIRNNACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHTVIHSEKLEKARSLLVSTSLSINEISQMCGYPSLQYFYSVFKKEYDVTPKEYRDRHSEVML
>Mature_392_residues
MFEKRHRITLLFNANKAYDRQVVEGVGEYLQASQLEWDIFIEEDFRARIENIKEWLGDGVIADYDDPEIEKLLADVHVPI
VGVGGSYHQPEQYPPVHYIATDNAALVESAFLHLKEKGVHRFAFYGLPASSGKRWAVEREYAFCQLVAKEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACELLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYQAAKLLHRLLNNEALPLQRQLIPPMRVVERRSTDYRSLNDPSVIQAMHYIRNNACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHTVIHSEKLEKARSLLVSTSLSINEISQMCGYPSLQYFYSVFKKEYDVTPKEYRDRHSEVML

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=392, Percent_Identity=88.5204081632653, Blast_Score=728, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44949; Mature: 44949

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKRHRITLLFNANKAYDRQVVEGVGEYLQASQLEWDIFIEEDFRARIENIKEWLGDGV
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCC
IADYDDPEIEKLLADVHVPIVGVGGSYHQPEQYPPVHYIATDNAALVESAFLHLKEKGVH
EECCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
RFAFYGLPASSGKRWAVEREYAFCQLVAKEKYRGVVYQGLETAPENWQHAQNRLADWLQT
EEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH
LPPQTGIIAVTDARARHVLQACELLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
CCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYQAAKLLHRLLNNEALPLQRQLIPPMRVVERRSTDYRSLNDPSVIQAMHYIRNNACK
HHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
GIKVEQVLDAVGISRSNLEKRFKEEVGETIHTVIHSEKLEKARSLLVSTSLSINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GYPSLQYFYSVFKKEYDVTPKEYRDRHSEVML
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFEKRHRITLLFNANKAYDRQVVEGVGEYLQASQLEWDIFIEEDFRARIENIKEWLGDGV
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCC
IADYDDPEIEKLLADVHVPIVGVGGSYHQPEQYPPVHYIATDNAALVESAFLHLKEKGVH
EECCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
RFAFYGLPASSGKRWAVEREYAFCQLVAKEKYRGVVYQGLETAPENWQHAQNRLADWLQT
EEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH
LPPQTGIIAVTDARARHVLQACELLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
CCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYQAAKLLHRLLNNEALPLQRQLIPPMRVVERRSTDYRSLNDPSVIQAMHYIRNNACK
HHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
GIKVEQVLDAVGISRSNLEKRFKEEVGETIHTVIHSEKLEKARSLLVSTSLSINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GYPSLQYFYSVFKKEYDVTPKEYRDRHSEVML
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]