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The map label for this gene is ygiX [H]

Identifier: 238896533

GI number: 238896533

Start: 4514198

End: 4514857

Strand: Direct

Name: ygiX [H]

Synonym: KP1_4720

Alternate gene names: 238896533

Gene position: 4514198-4514857 (Clockwise)

Preceding gene: 238896525

Following gene: 238896534

Centisome position: 86.01

GC content: 61.36

Gene sequence:

>660_bases
ATGCGCATATTACTGGTGGAAGATGACAAGCTTATCGGCGACGGCATCAAAGCCGGGCTGAGCAAAATGGGCTTTAGCAT
TGACTGGTTTACCGCCGGGCTGGAGGGCAAAAATGCCTTATACAGCGCCCCCTACGACGCCGCAATCCTTGACCTCACCC
TACCCGGCATCGATGGCCTCGATATTCTGCGCGAATGGCGCGATAAAGGCCGCCATGAGCCGGTGTTGATCCTCACCGCC
CGCGATGCCCTCAGCCAGCGGGTGGAGGGCCTGCGCCTGGGCGCCGATGACTACCTGTGCAAACCTTTCGCCCTGATTGA
GGTGGCAGCGCGCCTCGAAGCGTTGATCCGCCGCGCGCACGGCCAGAGCAGCAGCGAACTGCGCCACGGCAAGGTGATCC
TCGATCCGAACCGCTTAACCGCCAGCCTCGACGGCGAAAGCCTGGCGCTGAAGCCGAAGGAGTTCGCCCTGCTGGAACTG
CTTATGCGCAACGCCGGGCGCGTATTGCCGCGTAAGCTTATCGAGGAAAAGCTCTACACCTGGGACGACGAGGTCTCCAG
CAACGCCGTGGAAGTTCACGTCCATCATCTGCGCCGCAAGCTCGGCAGCGACTTTATCCGTACCGTCCACGGCATCGGCT
ATACCCTGGGTGACGCATGA

Upstream 100 bases:

>100_bases
CTTAACGACTTCTTAAGCGGAAAAAAGAAATTTTAATGCTGTACATCACCCGCTTCAACGCGGTTTACTGCGCAAAGAAA
CGGGATCGTCGGAGGGAAAC

Downstream 100 bases:

>100_bases
AACGACTTGCCCGCCTGAGCCTGCGCCTGCGCCTGACGCTGCTGTTTGCCGTACTGACCACCGCCGCCTGGGGGATGGCC
AGCGTTATCGCCTGGCAGCA

Product: DNA-binding transcriptional regulator QseB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGLDILREWRDKGRHEPVLILTA
RDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAHGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA

Sequences:

>Translated_219_residues
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGLDILREWRDKGRHEPVLILTA
RDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAHGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA
>Mature_219_residues
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGLDILREWRDKGRHEPVLILTA
RDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAHGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=83.9449541284404, Blast_Score=376, Evalue=1e-106,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=45.8333333333333, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=39.8190045248869, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=37.2727272727273, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=35.3211009174312, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=35.4545454545455, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=35.0649350649351, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=34.3891402714932, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=33.1818181818182, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=32.579185520362, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=29.0748898678414, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=28.125, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=29.646017699115, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=27.9475982532751, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790299, Length=167, Percent_Identity=31.1377245508982, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788550, Length=159, Percent_Identity=27.0440251572327, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24342; Mature: 24342

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL
CEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCEECCCCCCEEEEEECCCCCHH
DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH
HHHHHHHHCCCCCCEEEEECHHHHHHHHHHEECCCCCHHHCHHHHHHHHHHHHHHHHHHC
GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT
CCCCCCCCCCEEEECCCCEEEECCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
WDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL
CEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCEECCCCCCEEEEEECCCCCHH
DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH
HHHHHHHHCCCCCCEEEEECHHHHHHHHHHEECCCCCHHHCHHHHHHHHHHHHHHHHHHC
GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT
CCCCCCCCCCEEEECCCCEEEECCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
WDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]