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The map label for this gene is ydeL [H]

Identifier: 238896126

GI number: 238896126

Start: 4096638

End: 4097990

Strand: Reverse

Name: ydeL [H]

Synonym: KP1_4265

Alternate gene names: 238896126

Gene position: 4097990-4096638 (Counterclockwise)

Preceding gene: 238896141

Following gene: 238896124

Centisome position: 78.08

GC content: 65.26

Gene sequence:

>1353_bases
ATGGAAGCGATTAACCTCCCGCTTTATCAGCGTATCGCCCGCCAGTTGAAATCGGCGATTGAACGTGGCGAACTGACCCC
GGGCAGCCGTTTGCCCGCCAGCCGGGTGTACGCTCAGGAGCAGGGCGTTTCCCGGGCGACCATCGAAAACGCCTGGGGAG
AGCTGGTCGCCCAGGGATGGCTCGAACGGCGTGGGCAGGCGGGGACCTTTGTCAGCGAGCGGCTCAGCCCGCGCCAGCTG
GCGCCGGTACCGCCAGTGCAACCGGCCGCGCCGACGGAGCCGCTGCCGTTTCAGATGGGGCTGCCGGCGCTGGATCTCTT
TCCGCGCGGGCAGTGGGCGCGGGTGATGGGGCGTCGGCTGCGGACGCAGTCGCGGTTCGATCTTGCACCCGGCGATCCCG
GCGGCGATCCGCTTCTGCGCCAGGCTATCGTCGATTATCTACGCCTGTCGCGCAGTATCGACTGTCAGCCGGATCAGGTG
TTGATCACCGGCAGCTATGCCGCCTCCATGAACCTTATCCTGCGTACCCTGGCGCAGCCGGGACAGCATATGTGGATGGA
AGATCCGGGGTATCCCTTTATCCGGCCGGTCGTCGAGGCTGGGCAGCTGGCGGTGGATGCGATTCCGGTGGACGACGAAG
GGATGGACGTCGGCTGGGGCCAGCGTCATCACCCGCAGGCGCGATTTGCCCTGCTCACACCAGCCCATCAGAGTCCGCTG
GGGGTCGCGCTGTCGCTTCCCCGACGCCGCCAGCTGCTGGCGTGGGCCGCGGAGCGCGACGCGTGGATCATTGAGGACGA
TTACGATAGCGAGTTTCGCTATCACGGCAAACCGCTGCCGCCGCTGAAAAGCCTTGATGCGCCGCAGAGGGTCATCTACG
CGGGCACCTTCAGTAAGTCGATGTTCCCGGCGCTGCGCACCGCCTGGCTGGTGGTGCCGACCCCGCTGGTGGCGCGTTTT
CACCAGACCGCGGAGCGCCAGTCCTGCACCGTTCCCACCCTGTGGCAGCAGACGCTGGCGGATTTTATCCAGCAGGGACA
TTTTTGGCGTCATTTGAAGAAAATGCGTGCCAGCTATAGCCAGCGTAGACAGTGGCTGGAGTCGGCTCTGCAGGCGCAGG
GCTTTCAGGTCACGCCGCAGCTGGGGGGAATTCAACTGGTTATGTCGGTCAGCGGCGACGATCGGCTGCTCGCGCGGCGG
GCGGTTGTGGCCGGGCTGGCGGTGCAGGCGCTGAGCGACTGGCGGATTCGCCACGCGGGCGAGGGGGGATTATTGATGAG
TTTTACCAATATACGTTCGCCGGCGATGGCTGACGGACTTGCCCGACGGCTGAGAGAGGCGATTGCGATTTGA

Upstream 100 bases:

>100_bases
TAATTGGTTCATGGTGTTCTCCTCTCTAAGACGGCAGCCAAAATAGCACTATAATGGACTGCAAAAGATAGCCATATTGT
GATGAAAAAAGCAGACCATA

Downstream 100 bases:

>100_bases
TGGCGCTTAAGTCGGGGAAGCAGAAAAACCCCTGCGGCCAGAGGCGCGCAGGGGCTGACGCGTATTTGTTATCTTCATTG
CCTTCCGTAAAGCTCGCGGG

Product: putative GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MEAINLPLYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGWLERRGQAGTFVSERLSPRQL
APVPPVQPAAPTEPLPFQMGLPALDLFPRGQWARVMGRRLRTQSRFDLAPGDPGGDPLLRQAIVDYLRLSRSIDCQPDQV
LITGSYAASMNLILRTLAQPGQHMWMEDPGYPFIRPVVEAGQLAVDAIPVDDEGMDVGWGQRHHPQARFALLTPAHQSPL
GVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKSMFPALRTAWLVVPTPLVARF
HQTAERQSCTVPTLWQQTLADFIQQGHFWRHLKKMRASYSQRRQWLESALQAQGFQVTPQLGGIQLVMSVSGDDRLLARR
AVVAGLAVQALSDWRIRHAGEGGLLMSFTNIRSPAMADGLARRLREAIAI

Sequences:

>Translated_450_residues
MEAINLPLYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGWLERRGQAGTFVSERLSPRQL
APVPPVQPAAPTEPLPFQMGLPALDLFPRGQWARVMGRRLRTQSRFDLAPGDPGGDPLLRQAIVDYLRLSRSIDCQPDQV
LITGSYAASMNLILRTLAQPGQHMWMEDPGYPFIRPVVEAGQLAVDAIPVDDEGMDVGWGQRHHPQARFALLTPAHQSPL
GVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKSMFPALRTAWLVVPTPLVARF
HQTAERQSCTVPTLWQQTLADFIQQGHFWRHLKKMRASYSQRRQWLESALQAQGFQVTPQLGGIQLVMSVSGDDRLLARR
AVVAGLAVQALSDWRIRHAGEGGLLMSFTNIRSPAMADGLARRLREAIAI
>Mature_450_residues
MEAINLPLYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGWLERRGQAGTFVSERLSPRQL
APVPPVQPAAPTEPLPFQMGLPALDLFPRGQWARVMGRRLRTQSRFDLAPGDPGGDPLLRQAIVDYLRLSRSIDCQPDQV
LITGSYAASMNLILRTLAQPGQHMWMEDPGYPFIRPVVEAGQLAVDAIPVDDEGMDVGWGQRHHPQARFALLTPAHQSPL
GVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKSMFPALRTAWLVVPTPLVARF
HQTAERQSCTVPTLWQQTLADFIQQGHFWRHLKKMRASYSQRRQWLESALQAQGFQVTPQLGGIQLVMSVSGDDRLLARR
AVVAGLAVQALSDWRIRHAGEGGLLMSFTNIRSPAMADGLARRLREAIAI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=377, Percent_Identity=27.5862068965517, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1790797, Length=378, Percent_Identity=27.5132275132275, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50247; Mature: 50247

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50949 HTH_GNTR ; PS00501 SPASE_I_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAINLPLYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGW
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LERRGQAGTFVSERLSPRQLAPVPPVQPAAPTEPLPFQMGLPALDLFPRGQWARVMGRRL
HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
RTQSRFDLAPGDPGGDPLLRQAIVDYLRLSRSIDCQPDQVLITGSYAASMNLILRTLAQP
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCC
GQHMWMEDPGYPFIRPVVEAGQLAVDAIPVDDEGMDVGWGQRHHPQARFALLTPAHQSPL
CCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKS
CEEECCCHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCHH
MFPALRTAWLVVPTPLVARFHQTAERQSCTVPTLWQQTLADFIQQGHFWRHLKKMRASYS
HHHHHHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRRQWLESALQAQGFQVTPQLGGIQLVMSVSGDDRLLARRAVVAGLAVQALSDWRIRHAG
HHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC
EGGLLMSFTNIRSPAMADGLARRLREAIAI
CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEAINLPLYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGW
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LERRGQAGTFVSERLSPRQLAPVPPVQPAAPTEPLPFQMGLPALDLFPRGQWARVMGRRL
HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
RTQSRFDLAPGDPGGDPLLRQAIVDYLRLSRSIDCQPDQVLITGSYAASMNLILRTLAQP
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCC
GQHMWMEDPGYPFIRPVVEAGQLAVDAIPVDDEGMDVGWGQRHHPQARFALLTPAHQSPL
CCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKS
CEEECCCHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCHH
MFPALRTAWLVVPTPLVARFHQTAERQSCTVPTLWQQTLADFIQQGHFWRHLKKMRASYS
HHHHHHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRRQWLESALQAQGFQVTPQLGGIQLVMSVSGDDRLLARRAVVAGLAVQALSDWRIRHAG
HHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC
EGGLLMSFTNIRSPAMADGLARRLREAIAI
CCCEEEEECCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]