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The map label for this gene is yeaM [H]

Identifier: 238896141

GI number: 238896141

Start: 4112627

End: 4113394

Strand: Reverse

Name: yeaM [H]

Synonym: KP1_4282

Alternate gene names: 238896141

Gene position: 4113394-4112627 (Counterclockwise)

Preceding gene: 238896142

Following gene: 238896126

Centisome position: 78.37

GC content: 66.28

Gene sequence:

>768_bases
ATGACGACGACGCTTTCCTTCTCCTTTCAGCACCGCCCACTGGTGCCCTTTGCCCATGATTATGCCCACGGTGACCAGGA
AGACTGGCATCAGCATGACTGCGCTCAGCTGCTGCATATACTAAGCGGCGTGGTGCGGGTCGCGACGCCGGTAGGCTACT
GGGTGGTGCCGCCCGGGCGCGGCGTCTGGCTGCCGGCGGGAACGCCGCACGCGCTGCGCATGACCGGCAACGTGGCGGCG
CGCACCCTGTTTATCGATCCGCTGGCGCGCGCCGATCTTCCGGCGGGCTGCCAGATCGTACAGATCACGCCGCTGCTGCG
GGAACTGATCGTGTCATCCCTGGCGCTGGGGGAACGCTATGCCCCCGCCAGCCGCGACGAAAGAATTTATGAACTGATCC
TCGATGAGATCCGCGGGATGGCGATCCTGCCGTTTGGCCTGCCGGAGCCGCAAAGCGAAACGCTGCGTCGGCTGTGCCAG
CAGGTACGCGAGGTGCCGGGCGAGGCCTGGAGCAGCGGCCAGGCGGCGAAGGCGTGCAGCATGAGCGAGCGAACCCTAAA
CCGCCATTTTCAGCAGCAGACTAGCCTGACGTGGAGCGAGTGGGTGCGCCGGGCGAAGCTAATGGAAGCGCTGGTGCGCC
TGGCGCAGGGCCACTCCGTGCTGCGGGTGGCGCTGGAGCTGGGCTACGGTAGCCACAGCGCCTTCAGCGCCATGTTTCGT
CGGGTGATGGGCGTCGCCCTCAGCGACTATTTTCGTCCCCCGGCCTGA

Upstream 100 bases:

>100_bases
GACGAACTGGCGTTGCCGAAAGAAAAACTGCAGGAACTGCACATCTAGTGCTTCCGCCACGGCCCGACGCCTGTCGCCGG
GCCGCTCTTCTGACGCCGCG

Downstream 100 bases:

>100_bases
TCGGCGGCGCTGAGCGCATTGCACAGCGCCTGCAGCGAGGCGCGCGCCACGTCATTATCGATACCCACGCCCCAGTAGCT
TTCTCCTTGCGGAAAAACGC

Product: putative helix-turn-helix AraC-type trancriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTTTLSFSFQHRPLVPFAHDYAHGDQEDWHQHDCAQLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTGNVAA
RTLFIDPLARADLPAGCQIVQITPLLRELIVSSLALGERYAPASRDERIYELILDEIRGMAILPFGLPEPQSETLRRLCQ
QVREVPGEAWSSGQAAKACSMSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQGHSVLRVALELGYGSHSAFSAMFR
RVMGVALSDYFRPPA

Sequences:

>Translated_255_residues
MTTTLSFSFQHRPLVPFAHDYAHGDQEDWHQHDCAQLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTGNVAA
RTLFIDPLARADLPAGCQIVQITPLLRELIVSSLALGERYAPASRDERIYELILDEIRGMAILPFGLPEPQSETLRRLCQ
QVREVPGEAWSSGQAAKACSMSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQGHSVLRVALELGYGSHSAFSAMFR
RVMGVALSDYFRPPA
>Mature_254_residues
TTTLSFSFQHRPLVPFAHDYAHGDQEDWHQHDCAQLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTGNVAAR
TLFIDPLARADLPAGCQIVQITPLLRELIVSSLALGERYAPASRDERIYELILDEIRGMAILPFGLPEPQSETLRRLCQQ
VREVPGEAWSSGQAAKACSMSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQGHSVLRVALELGYGSHSAFSAMFRR
VMGVALSDYFRPPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=32.5892857142857, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28473; Mature: 28342

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTLSFSFQHRPLVPFAHDYAHGDQEDWHQHDCAQLLHILSGVVRVATPVGYWVVPPGR
CCCEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
GVWLPAGTPHALRMTGNVAARTLFIDPLARADLPAGCQIVQITPLLRELIVSSLALGERY
EEEECCCCCCEEEECCCHHHHHHEECCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCC
APASRDERIYELILDEIRGMAILPFGLPEPQSETLRRLCQQVREVPGEAWSSGQAAKACS
CCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
MSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQGHSVLRVALELGYGSHSAFSAMFR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
RVMGVALSDYFRPPA
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTTLSFSFQHRPLVPFAHDYAHGDQEDWHQHDCAQLLHILSGVVRVATPVGYWVVPPGR
CCEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
GVWLPAGTPHALRMTGNVAARTLFIDPLARADLPAGCQIVQITPLLRELIVSSLALGERY
EEEECCCCCCEEEECCCHHHHHHEECCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCC
APASRDERIYELILDEIRGMAILPFGLPEPQSETLRRLCQQVREVPGEAWSSGQAAKACS
CCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
MSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQGHSVLRVALELGYGSHSAFSAMFR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
RVMGVALSDYFRPPA
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]