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The map label for this gene is yfiD [H]

Identifier: 238896028

GI number: 238896028

Start: 3990193

End: 3990576

Strand: Reverse

Name: yfiD [H]

Synonym: KP1_4159

Alternate gene names: 238896028

Gene position: 3990576-3990193 (Counterclockwise)

Preceding gene: 238896030

Following gene: 238896026

Centisome position: 76.03

GC content: 54.43

Gene sequence:

>384_bases
ATGATTACTGGTATCCAAATTACTAAAGCGGCAAACGACGACCTGCTCAACTCTTTCTGGCTGCTGGATAGCGAAAAAGG
CGAAGCGCGCTGCCTGTGCGCCAAAGGTGGTTTTGCGGAAGATGATGTGGTTGCGGTAAGCAAACTGGGTGAAATCGAAT
ACCGTGAAATCCCGGTGGACGTGAAACCGGAAGTGCGCGTCGAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGC
GAAACCCTGCTGGACGCGGTTGAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGCTT
CAACTCTCTGACGCCGGAACAGCAGCGCGACGTTATCGCCCGTACCTTTACCGAAAGCCTGTAA

Upstream 100 bases:

>100_bases
CCGAGGGTGCGGCTGATATATATACACTCATACAACAATGGTTTTACCAATTGGCCGCGAAGAGGCCAAAATCGAATAAA
CACTGCCTGGGAGGCATCAA

Downstream 100 bases:

>100_bases
GGCTAACGCCAGATGTGAAAACGCCGGGATATCCCGGCGTTTTTTTTACTCATCGCTGGACGCTGATGGCGTCCCGGCCG
CGCTTGGCTTCCGGCGCTTA

Product: autonomous glycyl radical cofactor GrcA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MITGIQITKAANDDLLNSFWLLDSEKGEARCLCAKGGFAEDDVVAVSKLGEIEYREIPVDVKPEVRVEGGQHLNVNVLRR
ETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTFTESL

Sequences:

>Translated_127_residues
MITGIQITKAANDDLLNSFWLLDSEKGEARCLCAKGGFAEDDVVAVSKLGEIEYREIPVDVKPEVRVEGGQHLNVNVLRR
ETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTFTESL
>Mature_127_residues
MITGIQITKAANDDLLNSFWLLDSEKGEARCLCAKGGFAEDDVVAVSKLGEIEYREIPVDVKPEVRVEGGQHLNVNVLRR
ETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTFTESL

Specific function: Acts as a radical domain for damaged PFL and possibly other radical proteins [H]

COG id: COG3445

COG function: function code R; Acid-induced glycyl radical enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1788933, Length=127, Percent_Identity=92.1259842519685, Blast_Score=245, Evalue=6e-67,
Organism=Escherichia coli, GI1787131, Length=64, Percent_Identity=79.6875, Blast_Score=112, Evalue=8e-27,
Organism=Escherichia coli, GI48994926, Length=64, Percent_Identity=79.6875, Blast_Score=111, Evalue=1e-26,
Organism=Escherichia coli, GI1787044, Length=56, Percent_Identity=50, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR011140 [H]

Pfam domain/function: PF01228 Gly_radical [H]

EC number: NA

Molecular weight: Translated: 14243; Mature: 14243

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGIQITKAANDDLLNSFWLLDSEKGEARCLCAKGGFAEDDVVAVSKLGEIEYREIPVD
CCCCEEEEECCCCCHHHEEEEEECCCCCEEEEEECCCCCCCCEEEEHHCCCCEEEECCCC
VKPEVRVEGGQHLNVNVLRRETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIA
CCCCEEECCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCCHHHHHHHH
RTFTESL
HHHHHCC
>Mature Secondary Structure
MITGIQITKAANDDLLNSFWLLDSEKGEARCLCAKGGFAEDDVVAVSKLGEIEYREIPVD
CCCCEEEEECCCCCHHHEEEEEECCCCCEEEEEECCCCCCCCEEEEHHCCCCEEEECCCC
VKPEVRVEGGQHLNVNVLRRETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIA
CCCCEEECCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCCHHHHHHHH
RTFTESL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA