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The map label for this gene is oppB [H]

Identifier: 238895255

GI number: 238895255

Start: 3131671

End: 3132591

Strand: Reverse

Name: oppB [H]

Synonym: KP1_3307

Alternate gene names: 238895255

Gene position: 3132591-3131671 (Counterclockwise)

Preceding gene: 238895256

Following gene: 238895254

Centisome position: 59.69

GC content: 56.13

Gene sequence:

>921_bases
ATGTTAAAATTTATCTTACGTCGCTGTCTGGAAGCGATTCCGACGCTATTTATTCTTATCACCATCTCATTCTTCATGAT
GCGTCTGGCGCCGGGAAGTCCTTTTACCGGGGAGCGCACGCTACCGCCGGAAGTCATGGCGAATATTGAAGCAAAATACC
ATTTAAACGACCCTATCATGACGCAGTACTTCAATTATCTGAAGCAGCTGGCGCATGGCGATTTTGGTCCCTCTTTTAAA
TACAAAGATTATTCCGTCAACGATCTGGTGGCCGCCAGCTTCCCGGTTTCAGCGAAACTGGGCTTCGCCGCCTTTTTACT
GGCGGTGGTGATCGGCGTTGCCGCCGGGGTGATAGCCGCCCTGAAGCAAAATACCCGCTGGGACTACGCGGTGATGGGGG
TAGCCATGACTGGCGTGGTTATTCCGAGCTTTGTGGTCGCGCCGCTGCTGGTGATGATCTTTGCCATTACCCTGCACTGG
CTGCCGGGCGGCGGCTGGAACGGCGGGGCGCTGAAATTTATGATCCTGCCGATGGTGGCGCTTTCCCTGGCCTATATCGC
CAGCATCGCGCGTATCACCCGCGGCTCAATGATTGAAGTGCTGCACTCTAACTTTATCCGCACCGCGCGGGCGAAGGGGC
TGCCGATGCGTCGCATTATTCTGCGCCATGCGCTGAAGCCGGCGCTGCTGCCGGTGCTCTCCTATATGGGGCCAGCTTTC
GTGGGCATCATCACCGGCTCAATGGTCATTGAAACCATTTACGGCCTGCCGGGGATCGGCCAGCTGTTCGTTAACGGGGC
GCTTAACCGCGACTACTCGCTGGTGCTCAGCCTGACGATCCTCGTTGGCGCCCTGACTATCCTGTTCAACGCCATCGTTG
ACGTGCTGTACGCCGTTATCGATCCGAAGATTCGCTACTGA

Upstream 100 bases:

>100_bases
GTTATCAAACATTAATGGCAATACGTGGAGCGGGTCTCGGCTCGCTCCATCGTGTCTTATTTGAGAGCAGTGCAAAGGCA
CACGCCAGAAGGTACGGGCA

Downstream 100 bases:

>100_bases
AGCCGGAGTTCGCCATGATGTTAAGTAAGAAAAATAGCGAGGCGCTGGAAAACTTCAGTGAGAAGCTGGAAGTGGAGGGG
CGTAGCCTCTGGCAGGACGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFNYLKQLAHGDFGPSFK
YKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFNYLKQLAHGDFGPSFK
YKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFNYLKQLAHGDFGPSFK
YKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=96.4052287581699, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.9223300970874, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=34.7058823529412, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.8387096774194, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=31.4024390243902, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=29.3233082706767, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33439; Mature: 33439

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFNYLKQLAHGDFGPSFKYKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHWLPGGGWNGGALKFMILPMVA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFNYLKQLAHGDFGPSFKYKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHWLPGGGWNGGALKFMILPMVA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]