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The map label for this gene is ycdL [H]

Identifier: 238894076

GI number: 238894076

Start: 1972076

End: 1972786

Strand: Reverse

Name: ycdL [H]

Synonym: KP1_2025

Alternate gene names: 238894076

Gene position: 1972786-1972076 (Counterclockwise)

Preceding gene: 238894077

Following gene: 238894075

Centisome position: 37.59

GC content: 61.04

Gene sequence:

>711_bases
ATGATTACCCTTCCCGCTCGCCCGGAATCCCTGACCTTCGCGCCGCAGCAGAGCGCGCTGATTGTGGTCGATATGCAGAA
CGCCTACGCCAGCCAGGGCGGTTATCTGGATCTCGCCGGCTTTGACGTCTCCGCTACCCGGCCGGTTATCGACAATATTA
ATACCGCCGTCGCCGCCGCTCGCGCCGCGGGTATGTTGATTATCTGGTTCCAGAATGGCTGGGATGACCAGTATGTTGAA
GCCGGCGGCCCGGGCTCGCCGAACTATCACAAATCCAACGCGCTGAAAACGATGCGTCAGCGTCCGGAGCTGCAGGGCAA
GCTGCTGGCGAAAGGCGGCTGGGATTATCAGCTGGTGGACGAGCTGACGCCGCAGGAAGGCGATATCGTGTTGCCGAAAC
CGCGCTACAGCGGCTTCTTTAACACCCCGCTCGACAGCATTTTGCGCAGCCGCGGCATACGCCACCTGGTGTTCACCGGG
ATCGCCACCAACGTCTGCGTCGAATCGACGCTGCGCGATGGCTTCTTTCTCGAATACTTCGGCATCGTGCTGGAGGATGC
CACCCATCAGGCCGGCCCGGCCTTCGCCCAGCAGGCGGCGCTGTTCAATATTGAAACCTTTTTCGGCTGGGTCAGCGACG
TTGAGAGCTTCTGCCACGCGCTCTCCCCCGCCGCCCCGCTGGCTTTAGCCAAGGAGAAACGTTATGCCTAA

Upstream 100 bases:

>100_bases
TTGATGATTTTCTTGCCGGCATTGACGCCTTTGGCGAACGCATTCAGCCGCTGATGCGCTGCCGGAACCACATTGCTTCT
GTTACCCGTGAGGTGGCCTG

Downstream 100 bases:

>100_bases
ACAGGTGATTATTCCGCCAGGCACCACCGCGCCGATTGCCCCCTTTGTTCCGGGGACGCTCGCCGACGGGGTGGTCTACG
TCTCGGGCACCCTGCCGTTT

Product: hypothetical isochorismatase family protein

Products: NA

Alternate protein names: Ureidoacrylate amidohydrolase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAARAAGMLIIWFQNGWDDQYVE
AGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVDELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTG
IATNVCVESTLRDGFFLEYFGIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPAAPLALAKEKRYA

Sequences:

>Translated_236_residues
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAARAAGMLIIWFQNGWDDQYVE
AGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVDELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTG
IATNVCVESTLRDGFFLEYFGIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPAAPLALAKEKRYA
>Mature_236_residues
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAARAAGMLIIWFQNGWDDQYVE
AGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVDELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTG
IATNVCVESTLRDGFFLEYFGIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPAAPLALAKEKRYA

Specific function: In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby rele

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family. RutB subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081820, Length=225, Percent_Identity=88.4444444444444, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI87081992, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019916
- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25832; Mature: 25832

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAA
CCCCCCCCCCEEECCCCCEEEEEECCHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
RAAGMLIIWFQNGWDDQYVEAGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVD
HHCCEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEHH
ELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYF
HCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
GIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPAAPLALAKEKRYA
HHHHHCCCCCCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAA
CCCCCCCCCCEEECCCCCEEEEEECCHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
RAAGMLIIWFQNGWDDQYVEAGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVD
HHCCEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEHH
ELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYF
HCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
GIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPAAPLALAKEKRYA
HHHHHCCCCCCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA