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The map label for this gene is ycdM [H]

Identifier: 238894077

GI number: 238894077

Start: 1972786

End: 1973877

Strand: Reverse

Name: ycdM [H]

Synonym: KP1_2027

Alternate gene names: 238894077

Gene position: 1973877-1972786 (Counterclockwise)

Preceding gene: 238894079

Following gene: 238894076

Centisome position: 37.61

GC content: 60.35

Gene sequence:

>1092_bases
ATGAAAATTGGTGTTTTCATTCCCATTGGCAACAACGGCTGGCTGATCTCCACCCATGCCCCGCAGTATATGCCGACCTT
TGAACTGAATAAGGCCATCGTGCAGAAGGCCGAGCACTACCATTTCGACTTCGCGCTCTCCATGATCAAACTGCGCGGCT
TCGGCGGGAAAACTGAATTCTGGGATCACAACCTGGAGTCCTTCACCCTGATGGCCGGCCTGGCCGCGGTGACCTCGAAG
ATCCAGATCTACGCCACCGCCGCCACCCTGACGCTGCCGCCGGCGATTGTCGCCCGGATGGCCTCCACTATCGACTCCAT
CTCCGGCGGCCGGTTTGGCGTCAATCTGGTGACCGGCTGGCAAAAACCGGAATATGACCAGATGGGCATGTGGCCGGGAG
ATGACTATTTCGCCAGCCGCTATGACTATCTCACCGAATACGTCCAGGTGCTCCGTGACCTGTGGGGCACCGGGCGCAGC
GATTTCAAAGGTGACTACTTCACCATGAACGACTGCCGGGTCAGCCCGCGCCCGTCGCAGCCGATGAAGGTGATCTGCGC
CGGGCAGAGCGATGCCGGGATGGCCTTCTCCGCCCAGCATGCGGACTACAACTTTTGCTTTGGCAAAGGGGTCAACACGC
CAACGGCCTTTGCCCCGACCGCCGCACGCATGATGCAGGCGGCGGAAAAAACCGGCCGCGACGTGGGGTCCTATGTGCTG
TTCATGGTGATCGCCGACGAAACCGACGAGGCGGCGCGCGCCAAATGGGAACATTACAAAGCGGGCGCCGATGAAGAAGC
GCTAGCGTGGCTCACCGAGCAGAGTCAGAAAGATACCCGCTCCGGCAGCGATACCAACGTGCGCCAGATGGCCGACCCCA
CCTCGGCGGTCAACATTAACATGGGCACCCTGGTCGGATCGTATGCCAGCGTCGCCCGTATGCTTGATGAAGTAGCGAGC
GTGCCCGGCACCGACGGCGTGCTGCTGACCTTTGATGATTTTCTTGCCGGCATTGACGCCTTTGGCGAACGCATTCAGCC
GCTGATGCGCTGCCGGAACCACATTGCTTCTGTTACCCGTGAGGTGGCCTGA

Upstream 100 bases:

>100_bases
CTGGCATCGCCTTTGCTTTACCTTCTCTGCGAGGTGGTCCAGGGAGAGGCAGGATGCCGCACCATCGCAACCCATCTTCC
ATGACTGCAGAGAGGTAGGT

Downstream 100 bases:

>100_bases
TGATTACCCTTCCCGCTCGCCCGGAATCCCTGACCTTCGCGCCGCAGCAGAGCGCGCTGATTGTGGTCGATATGCAGAAC
GCCTACGCCAGCCAGGGCGG

Product: putative enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKIGVFIPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSK
IQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGWQKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRS
DFKGDYFTMNDCRVSPRPSQPMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVL
FMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVAS
VPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRNHIASVTREVA

Sequences:

>Translated_363_residues
MKIGVFIPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSK
IQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGWQKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRS
DFKGDYFTMNDCRVSPRPSQPMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVL
FMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVAS
VPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRNHIASVTREVA
>Mature_363_residues
MKIGVFIPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSK
IQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGWQKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRS
DFKGDYFTMNDCRVSPRPSQPMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVL
FMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVAS
VPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRNHIASVTREVA

Specific function: Catalyzes the pyrimidine ring opening between N-3 and C- 4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product wh

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ntaA/snaA/soxA(dszA) monooxygenase family. RutA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=363, Percent_Identity=91.4600550964187, Blast_Score=711, Evalue=0.0,
Organism=Escherichia coli, GI1787166, Length=303, Percent_Identity=24.0924092409241, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011251
- InterPro:   IPR019914
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 39946; Mature: 39946

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGVFIPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEF
CEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WDHNLESFTLMAGLAAVTSKIQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGW
CCCCCHHHHHHHHHHHHHHCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC
QKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRSDFKGDYFTMNDCRVSPRPSQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC
PMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVL
CCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHCEEE
FMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNIN
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEE
MGTLVGSYASVARMLDEVASVPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRNHIASVTR
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVA
HCC
>Mature Secondary Structure
MKIGVFIPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEF
CEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WDHNLESFTLMAGLAAVTSKIQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGW
CCCCCHHHHHHHHHHHHHHCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC
QKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRSDFKGDYFTMNDCRVSPRPSQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC
PMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVL
CCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHCEEE
FMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNIN
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEE
MGTLVGSYASVARMLDEVASVPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRNHIASVTR
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA