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The map label for this gene is rutC [H]

Identifier: 238894075

GI number: 238894075

Start: 1971691

End: 1972083

Strand: Reverse

Name: rutC [H]

Synonym: KP1_2024

Alternate gene names: 238894075

Gene position: 1972083-1971691 (Counterclockwise)

Preceding gene: 238894076

Following gene: 238894074

Centisome position: 37.57

GC content: 59.03

Gene sequence:

>393_bases
ATGCCTAAACAGGTGATTATTCCGCCAGGCACCACCGCGCCGATTGCCCCCTTTGTTCCGGGGACGCTCGCCGACGGGGT
GGTCTACGTCTCGGGCACCCTGCCGTTTGATAAGCAAAACAATGTGGTGCACATCGGCGACCCAAAGGCGCAAACCCGCC
ACGTGCTGGAGACCATCAGGAGCGTTATCGAAACGGCGGGCGGGAGTATGGCGGATGTGACTTTCAACAGCATCTTTATC
ACCGACTGGACAAATTACGCCGCGATTAACGAGGTCTACGCCGAGTTCTTCCCCGGCGATAAACCGGCGCGCTTCTGCAT
TCAGTGCGGACTGGTGAAGCCCGATGCGCTGGTGGAAATCGCCAGCGTCGCCCATATCGGTACCCCGACATGA

Upstream 100 bases:

>100_bases
TTCAATATTGAAACCTTTTTCGGCTGGGTCAGCGACGTTGAGAGCTTCTGCCACGCGCTCTCCCCCGCCGCCCCGCTGGC
TTTAGCCAAGGAGAAACGTT

Downstream 100 bases:

>100_bases
TGAGGCTCAATATTGCTCCGGCTCCGTGGCCCGGCGCGCCGGTGGTGGTCCTCAGCGCCGGTCTGGGCGGGGGCGGCGGC
TACTGGCTGGCGCAGCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPKQVIIPPGTTAPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIRSVIETAGGSMADVTFNSIFI
TDWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEIASVAHIGTPT

Sequences:

>Translated_130_residues
MPKQVIIPPGTTAPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIRSVIETAGGSMADVTFNSIFI
TDWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEIASVAHIGTPT
>Mature_129_residues
PKQVIIPPGTTAPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIRSVIETAGGSMADVTFNSIFIT
DWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEIASVAHIGTPT

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=85.0393700787402, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=32, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI87082396, Length=115, Percent_Identity=28.695652173913, Blast_Score=65, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=129, Percent_Identity=29.4573643410853, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=129, Percent_Identity=29.4573643410853, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=28.8, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=35.7142857142857, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13868; Mature: 13737

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQVIIPPGTTAPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIR
CCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
SVIETAGGSMADVTFNSIFITDWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEI
HHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEHEECCCCCCHHHHHH
ASVAHIGTPT
HHHHCCCCCC
>Mature Secondary Structure 
PKQVIIPPGTTAPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIR
CCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
SVIETAGGSMADVTFNSIFITDWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEI
HHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEHEECCCCCCHHHHHH
ASVAHIGTPT
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA