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The map label for this gene is yddQ [H]

Identifier: 238893610

GI number: 238893610

Start: 1462845

End: 1463678

Strand: Reverse

Name: yddQ [H]

Synonym: KP1_1524

Alternate gene names: 238893610

Gene position: 1463678-1462845 (Counterclockwise)

Preceding gene: 238893611

Following gene: 238893609

Centisome position: 27.89

GC content: 68.71

Gene sequence:

>834_bases
ATGCCGACTTATCTGTTTTTACGCCGCCTGCGCCGCTCACCCGCCGCCTTCAGCGGCCTGACCCTGGTGATCCTGCTGGT
GCTGACCGCGCTGTTCGCCCCGTGGCTGGCGCCGCACGATCCCAACTGGCAGGATGCCGCCGCTCGTCTGCAGGGGCCCG
GGGCGGGACACTGGCTCGGCACCGACAGCTACGGCCGCGACCTGCTGTCGCGCTTGCTCTACGGCGCCCGCCCGGCGCTG
GGTCTGGTGGCGCTGGTGACCGCCATTACCCTGCCCGTCGGGTTGCTGGTAGGTATCCTCTCCGGCTACTATGGCGGGTG
GCTGGAGCGGATACTGATGCGCTTTACCGACGTGGTGATGTCGATGCCGCGCCTGATCCTCGCCTTCGCGTTCGTGGCGA
TGCTCGGCCCGGGGCTGGTCAACGGCGCGCTGGCGTTAGCCCTGACCACCTGGCCGGCCTACGCCCGTCAGGCGCGCAGC
GAAATTCAGCGCCTGCGCCATAGCGACTACCTCGCCGCGGCGGAGATGCTGGGCATTCGCGGCGGGCGGCTGCTGGTCGG
CCATATTCTGCCGCTGTGTCTGCCGTCGGCGATTGTCCGGCTGGCGCTCGATCTGGCGGGCATTATCCTTGCCGCCGCCG
GGCTCGGCTTTCTCGGCCTGGGCGCCCGCCCGCCGATGGCGGAGTGGGGAGCGATGATTGCCGACGGGATGCAGGTGATT
TTCGACCAATGGTGGATCGCCGCCATCCCCGGCGCGGCGATCCTGCTCGCCAGCCTGGCGTTTAACCTGCTGGGCGATGG
CCTGCGCGATATTCTGGAGCCGCAACATGACTGA

Upstream 100 bases:

>100_bases
CGGCGATCATGGGCGGCACGCTGCTGATCGGCGTGAGTTTTGTGCTGATCAATAACCTGACCGACCTGCTGGTACGGTTA
ACCGATCCGAGGGTGCGCTG

Downstream 100 bases:

>100_bases
CATCCGACTGACCGTCCAGGGACTCGCCGTCGACTATCCCACCGCCCGGGTGGTGGACAACGTCAGCTTCACCCTCGGCA
ACGAGCGGCTGGCGCTGGTG

Product: putative ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPTYLFLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPNWQDAAARLQGPGAGHWLGTDSYGRDLLSRLLYGARPAL
GLVALVTAITLPVGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARS
EIQRLRHSDYLAAAEMLGIRGGRLLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVI
FDQWWIAAIPGAAILLASLAFNLLGDGLRDILEPQHD

Sequences:

>Translated_277_residues
MPTYLFLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPNWQDAAARLQGPGAGHWLGTDSYGRDLLSRLLYGARPAL
GLVALVTAITLPVGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARS
EIQRLRHSDYLAAAEMLGIRGGRLLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVI
FDQWWIAAIPGAAILLASLAFNLLGDGLRDILEPQHD
>Mature_276_residues
PTYLFLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPNWQDAAARLQGPGAGHWLGTDSYGRDLLSRLLYGARPALG
LVALVTAITLPVGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSE
IQRLRHSDYLAAAEMLGIRGGRLLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIF
DQWWIAAIPGAAILLASLAFNLLGDGLRDILEPQHD

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=46.6165413533835, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=41.4545454545455, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1789964, Length=280, Percent_Identity=41.4285714285714, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=41.1522633744856, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=31.3653136531365, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787549, Length=268, Percent_Identity=33.5820895522388, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=31.1111111111111, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29715; Mature: 29584

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYLFLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPNWQDAAARLQGPGAGHWLG
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
TDSYGRDLLSRLLYGARPALGLVALVTAITLPVGLLVGILSGYYGGWLERILMRFTDVVM
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMLGIR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGRLLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FDQWWIAAIPGAAILLASLAFNLLGDGLRDILEPQHD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PTYLFLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPNWQDAAARLQGPGAGHWLG
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
TDSYGRDLLSRLLYGARPALGLVALVTAITLPVGLLVGILSGYYGGWLERILMRFTDVVM
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMLGIR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGRLLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FDQWWIAAIPGAAILLASLAFNLLGDGLRDILEPQHD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]