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The map label for this gene is yddR [H]

Identifier: 238893611

GI number: 238893611

Start: 1463678

End: 1464730

Strand: Reverse

Name: yddR [H]

Synonym: KP1_1525

Alternate gene names: 238893611

Gene position: 1464730-1463678 (Counterclockwise)

Preceding gene: 238893612

Following gene: 238893610

Centisome position: 27.91

GC content: 63.53

Gene sequence:

>1053_bases
ATGCTGATATACCAGGAATTTCCATTTTCCATGCCATCGTTTTCCACTCACCTTACCCGCCTGCTGCAGGGGCTGTTTAC
GCTGCTGCTCACGCTGTTCGGGCTGTTGCTGGTCACCTTCTCGCTCTCCGCGCTGTCGCCCGTCGACCGCGTACTGCAGA
TCGTCGGCGACCATGCCAGCCAGTCGACCTATGACCAGGTTCGCCATCAGCTGGGTCTCGACCAGCCGCTGCCGGTGCAG
TTCTGGCACTACTTGGTCAACCTGGCCCATGGCGATCTTGGCATCGCCAGCGCTACCGGCCAGCCGGTGCTCCACGACCT
GCTGGCGGTCTTTCCGGCGACCCTTGAGCTGGCGACCCTGGCGCTGATCGTCGGCGCGGTACTGGGCATCGTCGCCGGGG
TGCTGTGCGCCCGTTACGCCGGTTCGCCGTGGGATCTGGCGGTTCGCACCTTTACCCTGTTGGGCAACTCGGTGCCCATT
TTCTGGCTCGGCCTGCTGATGCTGGCCCTGTTCTACGCCCGGCTGCAGTGGGCGCCAGGCCCGGGTCGCCTCGACGATAT
TTATCAGTACACCGTCGAGCCACGCAGCGGTTTTGCGCTGATCGACACCTGGCTCTCCGGCGATACCGCGGCGTTTAAAA
ATGCGATCGGCCATCTGGCGCTGCCGGTGCTGGTGCTGGCCTATTACTCGCTGGCGAGCATCACCCGCCTGACCCGCTCC
GCCTGCCTGAGCGAGATGAACAAAGAGTACATTCTGCTGGCGCGGGCCAAAGGGGCCGGAGAGATGACGATTCTGCTGCG
CCACGTCCTGCCCAATATCCGCGGCACTCTGCTGACGGTGACCGCTCTCGCCTGGACCTCCATGCTCGAAGGGGCGGTGC
TCACCGAAACCGTCTTCTCGTGGCCGGGGATCGGCCGCTACCTCACCACGGCGCTGTTCGCTGGGGATACCACGGCGATC
ATGGGCGGCACGCTGCTGATCGGCGTGAGTTTTGTGCTGATCAATAACCTGACCGACCTGCTGGTACGGTTAACCGATCC
GAGGGTGCGCTGA

Upstream 100 bases:

>100_bases
TGACCAAGTAAGCGGGTTTTGTCACCGGGTACGGCGGCCTTGTCTGCCCGGATGACCGACTCCTCACCCGGGCCCGGTCG
GCATCGCGCCGCCGGGTACA

Downstream 100 bases:

>100_bases
TGCCGACTTATCTGTTTTTACGCCGCCTGCGCCGCTCACCCGCCGCCTTCAGCGGCCTGACCCTGGTGATCCTGCTGGTG
CTGACCGCGCTGTTCGCCCC

Product: putative ABC transport system permease component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MLIYQEFPFSMPSFSTHLTRLLQGLFTLLLTLFGLLLVTFSLSALSPVDRVLQIVGDHASQSTYDQVRHQLGLDQPLPVQ
FWHYLVNLAHGDLGIASATGQPVLHDLLAVFPATLELATLALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPI
FWLGLLMLALFYARLQWAPGPGRLDDIYQYTVEPRSGFALIDTWLSGDTAAFKNAIGHLALPVLVLAYYSLASITRLTRS
ACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAI
MGGTLLIGVSFVLINNLTDLLVRLTDPRVR

Sequences:

>Translated_350_residues
MLIYQEFPFSMPSFSTHLTRLLQGLFTLLLTLFGLLLVTFSLSALSPVDRVLQIVGDHASQSTYDQVRHQLGLDQPLPVQ
FWHYLVNLAHGDLGIASATGQPVLHDLLAVFPATLELATLALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPI
FWLGLLMLALFYARLQWAPGPGRLDDIYQYTVEPRSGFALIDTWLSGDTAAFKNAIGHLALPVLVLAYYSLASITRLTRS
ACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAI
MGGTLLIGVSFVLINNLTDLLVRLTDPRVR
>Mature_350_residues
MLIYQEFPFSMPSFSTHLTRLLQGLFTLLLTLFGLLLVTFSLSALSPVDRVLQIVGDHASQSTYDQVRHQLGLDQPLPVQ
FWHYLVNLAHGDLGIASATGQPVLHDLLAVFPATLELATLALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPI
FWLGLLMLALFYARLQWAPGPGRLDDIYQYTVEPRSGFALIDTWLSGDTAAFKNAIGHLALPVLVLAYYSLASITRLTRS
ACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAI
MGGTLLIGVSFVLINNLTDLLVRLTDPRVR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=38.2530120481928, Blast_Score=220, Evalue=9e-59,
Organism=Escherichia coli, GI1787761, Length=334, Percent_Identity=43.4131736526946, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=37.2262773722628, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=30.6306306306306, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1789888, Length=283, Percent_Identity=33.9222614840989, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=27.3291925465839, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=25.2631578947368, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38124; Mature: 38124

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIYQEFPFSMPSFSTHLTRLLQGLFTLLLTLFGLLLVTFSLSALSPVDRVLQIVGDHAS
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QSTYDQVRHQLGLDQPLPVQFWHYLVNLAHGDLGIASATGQPVLHDLLAVFPATLELATL
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPIFWLGLLMLALFYARLQWAPG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
PGRLDDIYQYTVEPRSGFALIDTWLSGDTAAFKNAIGHLALPVLVLAYYSLASITRLTRS
CCCHHHHHHHCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFS
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
WPGIGRYLTTALFAGDTTAIMGGTLLIGVSFVLINNLTDLLVRLTDPRVR
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLIYQEFPFSMPSFSTHLTRLLQGLFTLLLTLFGLLLVTFSLSALSPVDRVLQIVGDHAS
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QSTYDQVRHQLGLDQPLPVQFWHYLVNLAHGDLGIASATGQPVLHDLLAVFPATLELATL
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPIFWLGLLMLALFYARLQWAPG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
PGRLDDIYQYTVEPRSGFALIDTWLSGDTAAFKNAIGHLALPVLVLAYYSLASITRLTRS
CCCHHHHHHHCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFS
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
WPGIGRYLTTALFAGDTTAIMGGTLLIGVSFVLINNLTDLLVRLTDPRVR
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]