| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is yddP [H]
Identifier: 238893609
GI number: 238893609
Start: 1462016
End: 1462882
Strand: Reverse
Name: yddP [H]
Synonym: KP1_1523
Alternate gene names: 238893609
Gene position: 1462882-1462016 (Counterclockwise)
Preceding gene: 238893610
Following gene: 238893608
Centisome position: 27.87
GC content: 66.9
Gene sequence:
>867_bases ATGGCCTGCGCGATATTCTGGAGCCGCAACATGACTGACATCCGACTGACCGTCCAGGGACTCGCCGTCGACTATCCCAC CGCCCGGGTGGTGGACAACGTCAGCTTCACCCTCGGCAACGAGCGGCTGGCGCTGGTGGGCGAATCCGGCTCCGGCAAAT CGATGACCGCCCGGGCGCTGATGGGCCTGGTGCGCAAGCCCGGGGTGGTGAGCGCTGAACGGCTGGAGGTGCTGGGGCGC GATGTGCTGACCCTCAGCGCCCGCGGCTGGCGCGCGCTGCGCGGCAACGATATCGCCATGGTGCTGCAGGACCCGCGCTA TGCGCTGAATCCGGTGCAGTCCATTCAGACGCAGTTGGAGGAGGCGTTAACCCTGCATCAGCGTCTGAGCCGCCGCGCGC GCGCCGAGGCGGTCAAAGACGCCATCGCCGCCGTCGGTCTGGATCTGCCGGTCCTCAGCCGCTATCCCGGCGAACTCTCC GGCGGGATGGGACAGCGGGTGATGATCGCCCTCGCGCTGCTCAATAACCCGAAGGTGCTGATAGCCGACGAGCCGACCTC GGCCCTCGACGCCCGCCTGCGCAACCAGATCCTCGAGCTGCTGGTGGAGCAGTGTGCGCAGCGGCAGATGGCCATGTTAC TGATCAGCCACGATCTACCGCTGGTGGCCGCGCATTGCGATCGCGTGCTGGTGATGTACCAGGGGAGACAGGTCGACGAG ATGCCGGCGCGGGCGCTGCCGAGCGCGACGCACCCTTACACCCGCACCCTGTGGACCTGCCGGCCAAATGCCCACACCTA CGGCCAGATGCTGCCGACCCTCGACAGAACCCAGGACTTTACGGAGACAGCCCATGGCGATCGTTAA
Upstream 100 bases:
>100_bases ATTGCCGACGGGATGCAGGTGATTTTCGACCAATGGTGGATCGCCGCCATCCCCGGCGCGGCGATCCTGCTCGCCAGCCT GGCGTTTAACCTGCTGGGCG
Downstream 100 bases:
>100_bases TCTTCAGGATTTACAGGTTACATTCGGCGCGAAGACGGCGGTCTCCGCCGCCAGTTTCCGTGTCGACGCCGGGGAAACCT TCAGCCTGATCGGCGCCTCG
Product: putative ABC transport system oligopeptide translocator
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MACAIFWSRNMTDIRLTVQGLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVVSAERLEVLGR DVLTLSARGWRALRGNDIAMVLQDPRYALNPVQSIQTQLEEALTLHQRLSRRARAEAVKDAIAAVGLDLPVLSRYPGELS GGMGQRVMIALALLNNPKVLIADEPTSALDARLRNQILELLVEQCAQRQMAMLLISHDLPLVAAHCDRVLVMYQGRQVDE MPARALPSATHPYTRTLWTCRPNAHTYGQMLPTLDRTQDFTETAHGDR
Sequences:
>Translated_288_residues MACAIFWSRNMTDIRLTVQGLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVVSAERLEVLGR DVLTLSARGWRALRGNDIAMVLQDPRYALNPVQSIQTQLEEALTLHQRLSRRARAEAVKDAIAAVGLDLPVLSRYPGELS GGMGQRVMIALALLNNPKVLIADEPTSALDARLRNQILELLVEQCAQRQMAMLLISHDLPLVAAHCDRVLVMYQGRQVDE MPARALPSATHPYTRTLWTCRPNAHTYGQMLPTLDRTQDFTETAHGDR >Mature_287_residues ACAIFWSRNMTDIRLTVQGLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVVSAERLEVLGRD VLTLSARGWRALRGNDIAMVLQDPRYALNPVQSIQTQLEEALTLHQRLSRRARAEAVKDAIAAVGLDLPVLSRYPGELSG GMGQRVMIALALLNNPKVLIADEPTSALDARLRNQILELLVEQCAQRQMAMLLISHDLPLVAAHCDRVLVMYQGRQVDEM PARALPSATHPYTRTLWTCRPNAHTYGQMLPTLDRTQDFTETAHGDR
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI46592971, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592978, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592956, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592964, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592898, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI156105685, Length=231, Percent_Identity=34.1991341991342, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI46592915, Length=248, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1789963, Length=239, Percent_Identity=44.3514644351464, Blast_Score=192, Evalue=3e-50, Organism=Escherichia coli, GI48994883, Length=279, Percent_Identity=39.7849462365591, Blast_Score=175, Evalue=4e-45, Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=42.4242424242424, Blast_Score=174, Evalue=6e-45, Organism=Escherichia coli, GI145693107, Length=245, Percent_Identity=45.7142857142857, Blast_Score=171, Evalue=4e-44, Organism=Escherichia coli, GI1787759, Length=277, Percent_Identity=40.4332129963899, Blast_Score=170, Evalue=9e-44, Organism=Escherichia coli, GI1787500, Length=245, Percent_Identity=42.4489795918367, Blast_Score=157, Evalue=9e-40, Organism=Escherichia coli, GI1787548, Length=274, Percent_Identity=35.036496350365, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1789962, Length=236, Percent_Identity=37.7118644067797, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=41.3502109704641, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1787758, Length=265, Percent_Identity=33.2075471698113, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=39.4366197183099, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787547, Length=233, Percent_Identity=33.9055793991416, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789032, Length=267, Percent_Identity=32.2097378277154, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=219, Percent_Identity=33.7899543378995, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=36.6197183098592, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787105, Length=255, Percent_Identity=30.9803921568627, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=34.8837209302326, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI48994997, Length=251, Percent_Identity=30.6772908366534, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=31.0810810810811, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786872, Length=207, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789672, Length=227, Percent_Identity=28.6343612334802, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786398, Length=259, Percent_Identity=31.6602316602317, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=29.9559471365639, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790190, Length=233, Percent_Identity=32.1888412017167, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=33.6322869955157, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=33.5, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082267, Length=197, Percent_Identity=35.0253807106599, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789991, Length=214, Percent_Identity=30.8411214953271, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=30.2222222222222, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87081791, Length=242, Percent_Identity=30.5785123966942, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=111, Percent_Identity=38.7387387387387, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=32.1782178217822, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=30.4932735426009, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787792, Length=226, Percent_Identity=34.070796460177, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786563, Length=230, Percent_Identity=29.1304347826087, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789864, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790162, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788450, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788053, Length=221, Percent_Identity=30.316742081448, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=84, Percent_Identity=39.2857142857143, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786345, Length=245, Percent_Identity=27.7551020408163, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786698, Length=206, Percent_Identity=26.6990291262136, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=25.3393665158371, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=27.1929824561404, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786319, Length=205, Percent_Identity=27.8048780487805, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=241, Percent_Identity=23.6514522821577, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115533592, Length=226, Percent_Identity=31.858407079646, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI212646699, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534520, Length=253, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992285, Length=233, Percent_Identity=29.6137339055794, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=233, Percent_Identity=29.1845493562232, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17569145, Length=261, Percent_Identity=27.9693486590038, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193208177, Length=219, Percent_Identity=31.5068493150685, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569143, Length=257, Percent_Identity=28.4046692607004, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=244, Percent_Identity=31.1475409836066, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567265, Length=219, Percent_Identity=30.1369863013699, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17543740, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211017, Length=235, Percent_Identity=26.3829787234043, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574744, Length=200, Percent_Identity=30, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI28574533, Length=242, Percent_Identity=27.6859504132231, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI19920532, Length=250, Percent_Identity=26.4, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24580930, Length=250, Percent_Identity=26.4, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=33.0275229357798, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31758; Mature: 31627
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACAIFWSRNMTDIRLTVQGLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARAL CEEEEEECCCCEEEEEEEEEEEECCCHHHHHCCCEEEECCCEEEEEECCCCCCHHHHHHH MGLVRKPGVVSAERLEVLGRDVLTLSARGWRALRGNDIAMVLQDPRYALNPVQSIQTQLE HHHHCCCCCCCHHHHHHHCCHHEEEECCCCEEECCCCEEEEEECCCHHCCHHHHHHHHHH EALTLHQRLSRRARAEAVKDAIAAVGLDLPVLSRYPGELSGGMGQRVMIALALLNNPKVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHEECCCEEE IADEPTSALDARLRNQILELLVEQCAQRQMAMLLISHDLPLVAAHCDRVLVMYQGRQVDE EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEECCCCCHH MPARALPSATHPYTRTLWTCRPNAHTYGQMLPTLDRTQDFTETAHGDR CCHHHCCCCCCCCHHEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure ACAIFWSRNMTDIRLTVQGLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARAL EEEEEECCCCEEEEEEEEEEEECCCHHHHHCCCEEEECCCEEEEEECCCCCCHHHHHHH MGLVRKPGVVSAERLEVLGRDVLTLSARGWRALRGNDIAMVLQDPRYALNPVQSIQTQLE HHHHCCCCCCCHHHHHHHCCHHEEEECCCCEEECCCCEEEEEECCCHHCCHHHHHHHHHH EALTLHQRLSRRARAEAVKDAIAAVGLDLPVLSRYPGELSGGMGQRVMIALALLNNPKVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHEECCCEEE IADEPTSALDARLRNQILELLVEQCAQRQMAMLLISHDLPLVAAHCDRVLVMYQGRQVDE EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEECCCCCHH MPARALPSATHPYTRTLWTCRPNAHTYGQMLPTLDRTQDFTETAHGDR CCHHHCCCCCCCCHHEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]