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The map label for this gene is allS [H]

Identifier: 238893465

GI number: 238893465

Start: 1310145

End: 1311068

Strand: Reverse

Name: allS [H]

Synonym: KP1_1357

Alternate gene names: 238893465

Gene position: 1311068-1310145 (Counterclockwise)

Preceding gene: 238893476

Following gene: 238893464

Centisome position: 24.98

GC content: 56.71

Gene sequence:

>924_bases
ATGCTCGATCCCGAAACATTACGCACCTTTGTCAGCGTCGCTGAGACCGGCAGCTTCTCAAGAGCAGCGGAAAAACTTTA
TAAAACAACCGCCACCATCAGCTATCGCATCAAATTACTGGAGGACAACACCGGTGTCGCTCTCTTTTCCCGCACAACGC
GCAGCGTACTGTTGACGCCGGCCGGGATGCACCTGCTGGCGCAAGCCAGAGAGTGGCTGGGGTGGATTGATAGTATGCCC
GGCGAGCTTCAGCAGATAAACGACGGGGTAGAGCGCCAGGTCAACATTGTCGTGAATAATCTGATGTACGACCCGCAGGC
CATTGCCCGGCTGCTGGCCTGGCTCACCCAGCGCTACCCTTTTACGCAATTTCATTTTTCACGACAAATCTATATGGGCG
TCTGGGATACGCTGCTGCATGACGACTTCTCCCTGGCGATTGGCGTGACCGGCACCGAACCGTTAGCGGAAAACATGGCG
GTCTACCCACTGGGTGAGGTGACCTGGCTCTTCGTGATGTCGCCGCATCACCCGCTAAGCCAGCAAACCGACCCGCTATC
AGAGGCTCAATTGCGGCGCTATCCGGCGGTGAATATTGAGGACAGCGCCCGACGGCTGACGAAGCGCGTCGCCTGGCGTC
TGCCCGGGCAAAAAGAGATAGTGGTTCCCGATATTGAAACCAAAGTTGCCGCCCATCTCGCCGGCGTCGGCATCGGCTTT
TTACCGGAACCGCTGTGCCTGCCGCTTATCGCTCAGGGCAAGCTGATCGCCCGACACATTCCGACCATGCGTCCCCCTTC
GCCATTGAGTCTCGCCTGGCGTAAAGATCATCATGGTAAAGCGGTACAGGATATCGCTTCATTGTTCAGCCATTCTGCAC
CGGAAATTGCGGGCTTCCTGAAGCTATTCAGCAATACACCGTGA

Upstream 100 bases:

>100_bases
AATTTTCCAAAATCTGATTTAACCCACATTATTGAAAAGGTTATTATGAAAAAATACTTAAAAATCATGGGTCAATTATT
AAATAACGAGGAATATGGCG

Downstream 100 bases:

>100_bases
AAAATCAATCCTCCCGGGCGCTCACCGCGTACAATAGGAAAATTATCGCGTCGAGCGACGCGTCTGGATTGCCTAACGGT
TAAAATGATGGAATCAGTAC

Product: DNA-binding transcriptional activator AllS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTPAGMHLLAQAREWLGWIDSMP
GELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYPFTQFHFSRQIYMGVWDTLLHDDFSLAIGVTGTEPLAENMA
VYPLGEVTWLFVMSPHHPLSQQTDPLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQKEIVVPDIETKVAAHLAGVGIGF
LPEPLCLPLIAQGKLIARHIPTMRPPSPLSLAWRKDHHGKAVQDIASLFSHSAPEIAGFLKLFSNTP

Sequences:

>Translated_307_residues
MLDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTPAGMHLLAQAREWLGWIDSMP
GELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYPFTQFHFSRQIYMGVWDTLLHDDFSLAIGVTGTEPLAENMA
VYPLGEVTWLFVMSPHHPLSQQTDPLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQKEIVVPDIETKVAAHLAGVGIGF
LPEPLCLPLIAQGKLIARHIPTMRPPSPLSLAWRKDHHGKAVQDIASLFSHSAPEIAGFLKLFSNTP
>Mature_307_residues
MLDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTPAGMHLLAQAREWLGWIDSMP
GELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYPFTQFHFSRQIYMGVWDTLLHDDFSLAIGVTGTEPLAENMA
VYPLGEVTWLFVMSPHHPLSQQTDPLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQKEIVVPDIETKVAAHLAGVGIGF
LPEPLCLPLIAQGKLIARHIPTMRPPSPLSLAWRKDHHGKAVQDIASLFSHSAPEIAGFLKLFSNTP

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=305, Percent_Identity=73.7704918032787, Blast_Score=481, Evalue=1e-137,
Organism=Escherichia coli, GI1786508, Length=290, Percent_Identity=36.2068965517241, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1787949, Length=282, Percent_Identity=31.5602836879433, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=26.3537906137184, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789492, Length=290, Percent_Identity=27.5862068965517, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693193, Length=276, Percent_Identity=29.7101449275362, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=26.8551236749117, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=114, Percent_Identity=34.2105263157895, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=258, Percent_Identity=26.3565891472868, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=26.1194029850746, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=28.0701754385965, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994962, Length=65, Percent_Identity=47.6923076923077, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=260, Percent_Identity=26.5384615384615, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34353; Mature: 34353

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTP
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEECCCCEEEECC
AGMHLLAQAREWLGWIDSMPGELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYP
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
FTQFHFSRQIYMGVWDTLLHDDFSLAIGVTGTEPLAENMAVYPLGEVTWLFVMSPHHPLS
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCEEEEECCCEEEEEEECCCCCCC
QQTDPLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQKEIVVPDIETKVAAHLAGVGIGF
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCCC
LPEPLCLPLIAQGKLIARHIPTMRPPSPLSLAWRKDHHGKAVQDIASLFSHSAPEIAGFL
CCCHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHH
KLFSNTP
HHHCCCC
>Mature Secondary Structure
MLDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTP
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEECCCCEEEECC
AGMHLLAQAREWLGWIDSMPGELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYP
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
FTQFHFSRQIYMGVWDTLLHDDFSLAIGVTGTEPLAENMAVYPLGEVTWLFVMSPHHPLS
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCEEEEECCCEEEEEEECCCCCCC
QQTDPLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQKEIVVPDIETKVAAHLAGVGIGF
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCCC
LPEPLCLPLIAQGKLIARHIPTMRPPSPLSLAWRKDHHGKAVQDIASLFSHSAPEIAGFL
CCCHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHH
KLFSNTP
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA