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The map label for this gene is ybbB [H]

Identifier: 238893464

GI number: 238893464

Start: 1308978

End: 1310060

Strand: Reverse

Name: ybbB [H]

Synonym: KP1_1356

Alternate gene names: 238893464

Gene position: 1310060-1308978 (Counterclockwise)

Preceding gene: 238893465

Following gene: 238893460

Centisome position: 24.96

GC content: 61.5

Gene sequence:

>1083_bases
ATGATGGAATCAGTACCCAAAAATATTCTGCAGATCCTCGCCAGCGATACGCCACTGATTGACGTACGCGCCCCGGTGGA
GTTTAGCCAAAGCGCGATGCCGGCGGCGATCAACCTGCCGCTGATGAATGATGAAGAACGCGCCGCGGTCGGCACCTGCT
ACAAGCGTCAGGGGCCGGAAGCGGCGCTGGCGCTCGGCCATAAACTGGTCCAGGGTGACCTGCGCGCCAGCCGTACTCAG
GCGTGGCTGGAAGCGTGCGCCCGTTACCCACACGGTTACCTGTGCTGCGCCCGCGGCGGCCAGCGCTCGCATATCGTCCA
GCAGTGGCTGAAAGAAGCTGGCGTGGATTACCCCCTGATCGTCGGCGGCTATAAAGCGCTACGCCAGGCGGCGATCCAGG
CCACCGACGAACTGGTGCAGCGGCCGATCGTGCTGATTGGCGGCTGCACCGGCAACGGCAAAACTCAGCTGGTTTGCTCG
CGCCCGGACGGTATCGACCTGGAAGGGCTTGCTCATCACCGCGGTTCTTCATTCGGTCGAACCCTGCAGGATCAGCATCC
GCAGGCCACCTTTGAAAACCACCTGGCGGTCAGCCTGCTTAAAAAAGCCGAACAGCAGACCCGCTGGGTGCTGGAAGATG
AAGGCCATATGATCGGCGCCAATCATCTACCGGAGAGCCTGCGCCTCCGCATGGCGCAGTCGCCGCTGGCGGTGGTGGAA
GATCCGTTTGACGTTCGCCTCGAACGGCTGCGCGAAGAGTATTTCGATCGCATGTATCGCGACTTTATCGCCGCGTATGG
CGAAGAGAAAGGCTGGCAGGCATACGGCGAGTATCTGCATCACGGCCTGTTTGCCATCCGCCGTCGCCTGGGGCTGCAGC
GTTTTGCTCAGCTCACTGAACGGCTCGATGAGGCGCTGGTGCAGCAGCAGCGCACCGCCAGCACCGAGGCGCACTTTGCC
TGGCTGGTACCGCTGCTGGAAGAATACTACGACCCGATGTATCGCTATCAGTTGGGGAAAAAAGCCGGGAAAATTCTCTT
TCGCGGCAGCTGGCAGGAGGTCGCAGCCTGGCTGGCGAAGTAA

Upstream 100 bases:

>100_bases
CAGCAATACACCGTGAAAAATCAATCCTCCCGGGCGCTCACCGCGTACAATAGGAAAATTATCGCGTCGAGCGACGCGTC
TGGATTGCCTAACGGTTAAA

Downstream 100 bases:

>100_bases
TCGCATGCTCTATTGTCCCGGCTTGCGGCGTAAACGCCTTAGCCGGGCTACCGGTCGGCGCGATTTGTAGCCACGGTAAG
CGCGCGCGACCGGGGAGTTG

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MMESVPKNILQILASDTPLIDVRAPVEFSQSAMPAAINLPLMNDEERAAVGTCYKRQGPEAALALGHKLVQGDLRASRTQ
AWLEACARYPHGYLCCARGGQRSHIVQQWLKEAGVDYPLIVGGYKALRQAAIQATDELVQRPIVLIGGCTGNGKTQLVCS
RPDGIDLEGLAHHRGSSFGRTLQDQHPQATFENHLAVSLLKKAEQQTRWVLEDEGHMIGANHLPESLRLRMAQSPLAVVE
DPFDVRLERLREEYFDRMYRDFIAAYGEEKGWQAYGEYLHHGLFAIRRRLGLQRFAQLTERLDEALVQQQRTASTEAHFA
WLVPLLEEYYDPMYRYQLGKKAGKILFRGSWQEVAAWLAK

Sequences:

>Translated_360_residues
MMESVPKNILQILASDTPLIDVRAPVEFSQSAMPAAINLPLMNDEERAAVGTCYKRQGPEAALALGHKLVQGDLRASRTQ
AWLEACARYPHGYLCCARGGQRSHIVQQWLKEAGVDYPLIVGGYKALRQAAIQATDELVQRPIVLIGGCTGNGKTQLVCS
RPDGIDLEGLAHHRGSSFGRTLQDQHPQATFENHLAVSLLKKAEQQTRWVLEDEGHMIGANHLPESLRLRMAQSPLAVVE
DPFDVRLERLREEYFDRMYRDFIAAYGEEKGWQAYGEYLHHGLFAIRRRLGLQRFAQLTERLDEALVQQQRTASTEAHFA
WLVPLLEEYYDPMYRYQLGKKAGKILFRGSWQEVAAWLAK
>Mature_360_residues
MMESVPKNILQILASDTPLIDVRAPVEFSQSAMPAAINLPLMNDEERAAVGTCYKRQGPEAALALGHKLVQGDLRASRTQ
AWLEACARYPHGYLCCARGGQRSHIVQQWLKEAGVDYPLIVGGYKALRQAAIQATDELVQRPIVLIGGCTGNGKTQLVCS
RPDGIDLEGLAHHRGSSFGRTLQDQHPQATFENHLAVSLLKKAEQQTRWVLEDEGHMIGANHLPESLRLRMAQSPLAVVE
DPFDVRLERLREEYFDRMYRDFIAAYGEEKGWQAYGEYLHHGLFAIRRRLGLQRFAQLTERLDEALVQQQRTASTEAHFA
WLVPLLEEYYDPMYRYQLGKKAGKILFRGSWQEVAAWLAK

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=349, Percent_Identity=69.9140401146132, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 40692; Mature: 40692

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMESVPKNILQILASDTPLIDVRAPVEFSQSAMPAAINLPLMNDEERAAVGTCYKRQGPE
CCCCHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCH
AALALGHKLVQGDLRASRTQAWLEACARYPHGYLCCARGGQRSHIVQQWLKEAGVDYPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEE
VGGYKALRQAAIQATDELVQRPIVLIGGCTGNGKTQLVCSRPDGIDLEGLAHHRGSSFGR
EHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCHHCC
TLQDQHPQATFENHLAVSLLKKAEQQTRWVLEDEGHMIGANHLPESLRLRMAQSPLAVVE
CHHHCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCEECCCCCCHHHHHHHHCCCHHHHC
DPFDVRLERLREEYFDRMYRDFIAAYGEEKGWQAYGEYLHHGLFAIRRRLGLQRFAQLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDEALVQQQRTASTEAHFAWLVPLLEEYYDPMYRYQLGKKAGKILFRGSWQEVAAWLAK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEECCCHHHHHHHHCC
>Mature Secondary Structure
MMESVPKNILQILASDTPLIDVRAPVEFSQSAMPAAINLPLMNDEERAAVGTCYKRQGPE
CCCCHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCH
AALALGHKLVQGDLRASRTQAWLEACARYPHGYLCCARGGQRSHIVQQWLKEAGVDYPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEE
VGGYKALRQAAIQATDELVQRPIVLIGGCTGNGKTQLVCSRPDGIDLEGLAHHRGSSFGR
EHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCHHCC
TLQDQHPQATFENHLAVSLLKKAEQQTRWVLEDEGHMIGANHLPESLRLRMAQSPLAVVE
CHHHCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCEECCCCCCHHHHHHHHCCCHHHHC
DPFDVRLERLREEYFDRMYRDFIAAYGEEKGWQAYGEYLHHGLFAIRRRLGLQRFAQLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDEALVQQQRTASTEAHFAWLVPLLEEYYDPMYRYQLGKKAGKILFRGSWQEVAAWLAK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA