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The map label for this gene is ybeY [C]

Identifier: 238028584

GI number: 238028584

Start: 3463296

End: 3464114

Strand: Direct

Name: ybeY [C]

Synonym: bglu_1g30480

Alternate gene names: 238028584

Gene position: 3463296-3464114 (Clockwise)

Preceding gene: 238028583

Following gene: 238028585

Centisome position: 88.65

GC content: 68.13

Gene sequence:

>819_bases
ATGAAATCCTCCCGCTCCCAGAAAGCCTCCAAGCCCGCCCTCACCGGCGCCCCCCGCGTCTCGCTGTTCGACGAACGCGG
CAAGGTCAAGTCGATCGACGCGCAGGGCCTGCGCATCGATTTTCCCGACGGCCGCGCGCTGATGTTCGACCTGTCCGGCG
GTGCCGGCGACGCCTCGGTCGCGATCGTCGCGCAGCATGCCGATCCCGAGCAGCGCGCGACGCTGACGTTGCGCCCCGAA
CACTACGACAGCCTCACGCTGTCGGTGGGCGCCGAAGCGGCCGCGGCCGACGCGATCCTGCCCGATCTCGACGGCAACGC
AGCGGCCCCCTGCGACGACGACGACGCCCCGCCGCCGGCCGGCGCCCCCGAGCTCGAACTGGTCGTGCAATACGGCGACG
AGATCACCACCGCGCAGCGCAAGACGCTGCCCAAGCGCAAGCTGATCGCCGAATGGCTGTCGACCTCGCTGTCGGCCGAT
GCGCAGCTCACGGTGCGCTTCGTCGGCGAGCAGGAAGGCCGCGAACTGAACCGCGGCTACCGCAAGAAGGACTACCCCAC
CAACGTGCTGACCTTCGCCTACGACGCGGCGCCCGACGGCACCACGATCGGCGATCTGGTGATCTGCTGCCCGGTGGTGG
AAAAGGAGGCAGCCGAGCAGGACAAGCCGCTCCTGGCCCATTACGCGCATCTGCTCGTCCATGGCGCGCTGCACGCGCAG
GGGTATGATCACGAACGTAGCGAGGAGGACGCGGCCGAAATGGAAGCGCTCGAAACCGACATCCTCGCCAAGCTCGGCTT
CCCGAACCCGTATCAATAA

Upstream 100 bases:

>100_bases
GTTGCCCAAGCCTGCCGCGGCACGCCTGCCGGCCTGCCGGGAGGGCGAAACAGCAGGCCGTTTGGTGTATGCTCGGACGA
TTGCGTTTGCTCCTCCAGCG

Downstream 100 bases:

>100_bases
GGGGCAGCACGGCCGGCCGGGCATCGTCGATTCCCTGAACCGGCCGCGAGCCCCCATCGTGAGTACGCCCTTTCCCGCCA
CCAACGCGTATCCGCCGTCG

Product: unkown domain/putative metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKSSRSQKASKPALTGAPRVSLFDERGKVKSIDAQGLRIDFPDGRALMFDLSGGAGDASVAIVAQHADPEQRATLTLRPE
HYDSLTLSVGAEAAAADAILPDLDGNAAAPCDDDDAPPPAGAPELELVVQYGDEITTAQRKTLPKRKLIAEWLSTSLSAD
AQLTVRFVGEQEGRELNRGYRKKDYPTNVLTFAYDAAPDGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQ
GYDHERSEEDAAEMEALETDILAKLGFPNPYQ

Sequences:

>Translated_272_residues
MKSSRSQKASKPALTGAPRVSLFDERGKVKSIDAQGLRIDFPDGRALMFDLSGGAGDASVAIVAQHADPEQRATLTLRPE
HYDSLTLSVGAEAAAADAILPDLDGNAAAPCDDDDAPPPAGAPELELVVQYGDEITTAQRKTLPKRKLIAEWLSTSLSAD
AQLTVRFVGEQEGRELNRGYRKKDYPTNVLTFAYDAAPDGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQ
GYDHERSEEDAAEMEALETDILAKLGFPNPYQ
>Mature_272_residues
MKSSRSQKASKPALTGAPRVSLFDERGKVKSIDAQGLRIDFPDGRALMFDLSGGAGDASVAIVAQHADPEQRATLTLRPE
HYDSLTLSVGAEAAAADAILPDLDGNAAAPCDDDDAPPPAGAPELELVVQYGDEITTAQRKTLPKRKLIAEWLSTSLSAD
AQLTVRFVGEQEGRELNRGYRKKDYPTNVLTFAYDAAPDGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQ
GYDHERSEEDAAEMEALETDILAKLGFPNPYQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=134, Percent_Identity=47.7611940298507, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 29232; Mature: 29232

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSRSQKASKPALTGAPRVSLFDERGKVKSIDAQGLRIDFPDGRALMFDLSGGAGDASV
CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCCCCEEEEECCCCCCCCEE
AIVAQHADPEQRATLTLRPEHYDSLTLSVGAEAAAADAILPDLDGNAAAPCDDDDAPPPA
EEEEECCCCCCCCEEEECCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GAPELELVVQYGDEITTAQRKTLPKRKLIAEWLSTSLSADAQLTVRFVGEQEGRELNRGY
CCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCC
RKKDYPTNVLTFAYDAAPDGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQ
CCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
GYDHERSEEDAAEMEALETDILAKLGFPNPYQ
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSSRSQKASKPALTGAPRVSLFDERGKVKSIDAQGLRIDFPDGRALMFDLSGGAGDASV
CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCCCCEEEEECCCCCCCCEE
AIVAQHADPEQRATLTLRPEHYDSLTLSVGAEAAAADAILPDLDGNAAAPCDDDDAPPPA
EEEEECCCCCCCCEEEECCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GAPELELVVQYGDEITTAQRKTLPKRKLIAEWLSTSLSADAQLTVRFVGEQEGRELNRGY
CCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCC
RKKDYPTNVLTFAYDAAPDGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQ
CCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
GYDHERSEEDAAEMEALETDILAKLGFPNPYQ
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA