| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is chaC [H]
Identifier: 238028585
GI number: 238028585
Start: 3464173
End: 3464805
Strand: Direct
Name: chaC [H]
Synonym: bglu_1g30490
Alternate gene names: 238028585
Gene position: 3464173-3464805 (Clockwise)
Preceding gene: 238028584
Following gene: 238028586
Centisome position: 88.68
GC content: 72.04
Gene sequence:
>633_bases GTGAGTACGCCCTTTCCCGCCACCAACGCGTATCCGCCGTCGATCGGCTCCGGCCGGCTGCTCTCCGAAGCCGAACTCGC CGCCTCGCTCCAGGCGACGCTGGCGCACTGGGACCGCCAGGCCGATCTCTGGCTGTTCGGCTATGGCTCGCTGATCTGGA ATCCCGGCCTGCCGACCGTCGAACAGGTCCACGGGCGCGTCCACGGCTATCACCGCGGCCTCTATCTGTGGTCGCGCGTC AACCGCGGCACGCCCGAGCGGCCGGGCCTCGTGCTCGCGCTCGACCGCGGCGGCTCATGCAGCGGCGTGGCGTTCCGGAT CGCCGGGCCCAGCGCGCTGCCGCATCTCGAAACGCTCTGGCAGCGCGAAATGCCGATGGGTTCGTACCGGCCCGCCTGGC TGCCCTGCACGCTCAGGACCGGCCAGCGGGTACGCGCGCTCGCGTTCGTGATGCGTCGCGACGTGCCGACCTACACCGGC AAGCTGTCCGACGAGGTGGTGCGCGCCGTGTTCGGCAGCGCGCAGGGCCGCTACGGCACCACGCTCGACTACGTGACGCG CACCGTGGCCGCGCTGCGCGAAAGCGGCATTCCCGACCGTGCGCTGGAGGCGCTGCTCGCGCGCTGCGGCTGA
Upstream 100 bases:
>100_bases GACATCCTCGCCAAGCTCGGCTTCCCGAACCCGTATCAATAAGGGGCAGCACGGCCGGCCGGGCATCGTCGATTCCCTGA ACCGGCCGCGAGCCCCCATC
Downstream 100 bases:
>100_bases GACGAGCGCCGGCGGCCCGCGCGGCGCCAGCAGGCCCCGTTTTCGGGCGGACGGCCGGCCGTCACGCCCGAAGGTGCGGC CGCCCGCCTCGGCCGGGGCA
Product: ChaC-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MSTPFPATNAYPPSIGSGRLLSEAELAASLQATLAHWDRQADLWLFGYGSLIWNPGLPTVEQVHGRVHGYHRGLYLWSRV NRGTPERPGLVLALDRGGSCSGVAFRIAGPSALPHLETLWQREMPMGSYRPAWLPCTLRTGQRVRALAFVMRRDVPTYTG KLSDEVVRAVFGSAQGRYGTTLDYVTRTVAALRESGIPDRALEALLARCG
Sequences:
>Translated_210_residues MSTPFPATNAYPPSIGSGRLLSEAELAASLQATLAHWDRQADLWLFGYGSLIWNPGLPTVEQVHGRVHGYHRGLYLWSRV NRGTPERPGLVLALDRGGSCSGVAFRIAGPSALPHLETLWQREMPMGSYRPAWLPCTLRTGQRVRALAFVMRRDVPTYTG KLSDEVVRAVFGSAQGRYGTTLDYVTRTVAALRESGIPDRALEALLARCG >Mature_209_residues STPFPATNAYPPSIGSGRLLSEAELAASLQATLAHWDRQADLWLFGYGSLIWNPGLPTVEQVHGRVHGYHRGLYLWSRVN RGTPERPGLVLALDRGGSCSGVAFRIAGPSALPHLETLWQREMPMGSYRPAWLPCTLRTGQRVRALAFVMRRDVPTYTGK LSDEVVRAVFGSAQGRYGTTLDYVTRTVAALRESGIPDRALEALLARCG
Specific function: Unknown
COG id: COG3703
COG function: function code P; Uncharacterized protein involved in cation transport
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chaC family [H]
Homologues:
Organism=Homo sapiens, GI218563698, Length=179, Percent_Identity=30.7262569832402, Blast_Score=72, Evalue=5e-13, Organism=Escherichia coli, GI145693119, Length=193, Percent_Identity=37.3056994818653, Blast_Score=124, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17560078, Length=180, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641578, Length=182, Percent_Identity=31.3186813186813, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI45553467, Length=163, Percent_Identity=30.6748466257669, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649389, Length=163, Percent_Identity=30.6748466257669, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649391, Length=163, Percent_Identity=30.6748466257669, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649393, Length=163, Percent_Identity=30.6748466257669, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013024 - InterPro: IPR006840 [H]
Pfam domain/function: PF04752 ChaC [H]
EC number: NA
Molecular weight: Translated: 23033; Mature: 22901
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPFPATNAYPPSIGSGRLLSEAELAASLQATLAHWDRQADLWLFGYGSLIWNPGLPTV CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCHH EQVHGRVHGYHRGLYLWSRVNRGTPERPGLVLALDRGGSCSGVAFRIAGPSALPHLETLW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHH QREMPMGSYRPAWLPCTLRTGQRVRALAFVMRRDVPTYTGKLSDEVVRAVFGSAQGRYGT HHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC TLDYVTRTVAALRESGIPDRALEALLARCG HHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure STPFPATNAYPPSIGSGRLLSEAELAASLQATLAHWDRQADLWLFGYGSLIWNPGLPTV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCHH EQVHGRVHGYHRGLYLWSRVNRGTPERPGLVLALDRGGSCSGVAFRIAGPSALPHLETLW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHH QREMPMGSYRPAWLPCTLRTGQRVRALAFVMRRDVPTYTGKLSDEVVRAVFGSAQGRYGT HHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC TLDYVTRTVAALRESGIPDRALEALLARCG HHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]