| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is pdhA [H]
Identifier: 238028031
GI number: 238028031
Start: 2816574
End: 2819270
Strand: Reverse
Name: pdhA [H]
Synonym: bglu_1g24810
Alternate gene names: 238028031
Gene position: 2819270-2816574 (Counterclockwise)
Preceding gene: 238028036
Following gene: 238028030
Centisome position: 72.17
GC content: 65.37
Gene sequence:
>2697_bases ATGTCCGCTGTACCCAACGAAGTGATGAAGTACGTCGCCGCCGAGCAGGACGACGATTCGCAAGAAACCGTCGAATGGCT GGAGGCACTGGACGGCGTGATCTCGTCGGTCGGTCCGGGCCGAGCGCATTACCTCATCGAAAAGCAGATCGAGTTCGCCC GCATGCATGGCGAGCATCTGCCGTTTTCCGCGAACACCCCCTATATCAACACCATCCCGGTCGAGCGTCAGGCGAAGATC CCGGGCGATCAGGACGTCGAACACCGGATCCGCTCGTACACGCGCTGGAACGCGATCGCGATGGTGCTGCGCGCCGGCAA GGACACCAACGTCGGCGGCCACATCGCCTCGTTCGCGTCGGCCGCGACGCTCTATGACGTCGGCTTCAACCATTTCTGGC ACGCGCCGTCCGAAGCGCACGGCGGTGACCTCGTGTTCGTGCAGGGCCACTCGTCGCCGGGCGTCTATTCGCGCGCGTTC CTGCTCGGCCGCCTGAGCGAGGAGCAGCTCGACAACTTCCGCCAGGAAGTCGGCGGCAACGGCATCTCGTCGTATCCGCA CCCGTGGCTGATGCCGGACTTCTGGCAGTTCCCGACGGTGTCGATGGGCCTCGGCCCGATTATGGCGATCTACCAGGCGC GCTTCATGAAGTACCTGGAGGCGCGCGGCATCACCAAGACCGCGGGCCGCAAGGTTTGGGCCTTCCTCGGCGACGGCGAG ACCGACGAGCCGGAATCGCTCGGCGCGATCGGCATGGCGAGCCGCGAGCGGCTCGACAACCTCGTGTTCGTGATCAACTG CAACCTGCAGCGCCTGGACGGTCCGGTGCGCGGCAACGGCAAGATCATCCAGGAACTCGAATCGGAATTCCGCGGTGCCG GCTGGAACGTCATCAAGGTGATCTGGGGCAGCCGCTGGGATTCGCTGCTGGCCCGCGACAAGTCGGGCGCGCTGATGCGC CGCATGATGGAAGTCGTCGACGGCGAATACCAGACCTACAAGTCGGAGTCCGGCGCGTTCGTGCGCGAGCACTTCTTCAA CACGCCGGAACTGAAGGCGATGGTCGCCGACTGGTCGGACGACGACATCTGGAACCTGAACCGCGGCGGCCATGATCCGC ACAAGATCTACGCGGCGTTCCACGAGGCCAGCAACACCAAGGGCGCGCCGACCGTGATCCTCGCCAAGACGATCAAGGGC TACGGGATGGGCGAAGCCGGCCAGGCGATGAACATCACCCACCAGCAGAAGAAGCTGCCGGTGGAACAGCTCAAGCGCTT CCGCGACCAGTTCCGTCTGCCGATCAGCGACGACGTGATCGCCGACGTGCCCTACCTGAAGTTCGAGGAAGGCTCGAAGG AACTCGAGTACATGCGCGCGCACCGCCAGGCGCTCGGCGGCTACCTGCCGCAGCGCCGCCAGAAGGCGCAGTCGCTGCCG GTGCCGGCGCTCGACGCGTTCGAGCCGCTGCTCAAGGGCACGGGCGAGGGCCGCGAGATATCGACCACGATGGCGTTCGT GCGGATCCTGAACATCCTGCTGAAGGACAAGGCGCTCGGCAAGCGCGTCGTGCCGATCGTGCCGGACGAGTCGCGTACCT TCGGCATGGAAGGCCTGTTCCGCCAGATCGGCATCTGGAACCAGCAGGGCCAGAAGTACGTGCCGGAAGATTCCGACCAG CTGATGTTCTACAAGGAATCGGAAACCGGCCAGATCCTGCAGGAAGGCATCAACGAAGCGGGCGGCATGTGCGACTGGAT CGCGGCGGCGACCTCGTATTCGACGCACGGCGAGATCATGGTGCCGTTCTACATCTTCTATTCGATGTTCGGCTTCCAGC GCATCGGCGACCTGGCCTGGGCGGCGGGCGACATGCGCTCGCGCGGCTTCCTGCTGGGCGGCACTGCCGGGCGTACCACG CTCAACGGTGAAGGCCTGCAGCACGAAGACGGCCACTCGCTGCTGTGGGCGGCCTCGGTGCCGAACTGCGTGAGCTACGA CCCGACCTTCGGCTACGAGCTCGCCGTGATCATCCAGAACGGCCTGCAGCGCATGGTGGCCGATCAGGAGGACGTGTACT ACTACGTCACGGTGATGAACGAGAACTACGAGCACCCGGCGATTCCGCAGGGTGAGCACGTGGCGGCCGACATCATCAAG GGCATGTACGCGTTCCGCAAGGCCGAGGCCGACCAGAAGGCGCCCCGCGTGCAACTGCTCGGCGCGGGCACGATCTTCAA CGAAGTGATCGCCGCCGCCGACCTGCTGAAGAACGACTGGGGCGTCGCCGCCGATCTCTGGAGCGTGCCGAGCTTCACCG AGCTCGCGCGCGAGGGCCACGAGGTCGAGCGCTGGAACCTGCTGAACCCCACCGAGGAGCGCCGCCTGTCGCATGTCCAG AGGCTGCTGAAGGACACGCAGGGCCCGGTGATCGCCTCGACCGACTACGTGCGCGCGCTGGCCGACCAGATCCGCGGCCA GATCGATCGCCGTTACGTGGTGCTCGGCACCGACGGCTATGGCCGCTCGGACACGCGCAAGGCGCTGCGCCACTTCTTCG AGGTGGATCGCCACTGGGTGACCGTCGCCGCGCTGAACGCGCTGGCCGACGAAGGCACGATCGACCGCAAGGTGGTCGCC GAGGCGATCAAGAAGTACGGCCTCGATCCGTCGAAACCCAATCCGATGACGGTTTAA
Upstream 100 bases:
>100_bases TGGCCAGCCTCTTTACAATCCGCCGGGAGCTTGCCGCAGCCGCCGGAATCGGGTCGTCTGCACGCAGCGCGATCTCACAC TCAGGACCCAGGAGACGAGC
Downstream 100 bases:
>100_bases ACGCATACGTGCCATGTCACGCCGCGCCGCCCGACCAGGGCGGCGCGGCCCAGGAGACTTTTACAGATGAGTCAAGCGAT CGAAGTCAAGGTGCCGGATA
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MSAVPNEVMKYVAAEQDDDSQETVEWLEALDGVISSVGPGRAHYLIEKQIEFARMHGEHLPFSANTPYINTIPVERQAKI PGDQDVEHRIRSYTRWNAIAMVLRAGKDTNVGGHIASFASAATLYDVGFNHFWHAPSEAHGGDLVFVQGHSSPGVYSRAF LLGRLSEEQLDNFRQEVGGNGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLEARGITKTAGRKVWAFLGDGE TDEPESLGAIGMASRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDSLLARDKSGALMR RMMEVVDGEYQTYKSESGAFVREHFFNTPELKAMVADWSDDDIWNLNRGGHDPHKIYAAFHEASNTKGAPTVILAKTIKG YGMGEAGQAMNITHQQKKLPVEQLKRFRDQFRLPISDDVIADVPYLKFEEGSKELEYMRAHRQALGGYLPQRRQKAQSLP VPALDAFEPLLKGTGEGREISTTMAFVRILNILLKDKALGKRVVPIVPDESRTFGMEGLFRQIGIWNQQGQKYVPEDSDQ LMFYKESETGQILQEGINEAGGMCDWIAAATSYSTHGEIMVPFYIFYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTT LNGEGLQHEDGHSLLWAASVPNCVSYDPTFGYELAVIIQNGLQRMVADQEDVYYYVTVMNENYEHPAIPQGEHVAADIIK GMYAFRKAEADQKAPRVQLLGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGHEVERWNLLNPTEERRLSHVQ RLLKDTQGPVIASTDYVRALADQIRGQIDRRYVVLGTDGYGRSDTRKALRHFFEVDRHWVTVAALNALADEGTIDRKVVA EAIKKYGLDPSKPNPMTV
Sequences:
>Translated_898_residues MSAVPNEVMKYVAAEQDDDSQETVEWLEALDGVISSVGPGRAHYLIEKQIEFARMHGEHLPFSANTPYINTIPVERQAKI PGDQDVEHRIRSYTRWNAIAMVLRAGKDTNVGGHIASFASAATLYDVGFNHFWHAPSEAHGGDLVFVQGHSSPGVYSRAF LLGRLSEEQLDNFRQEVGGNGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLEARGITKTAGRKVWAFLGDGE TDEPESLGAIGMASRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDSLLARDKSGALMR RMMEVVDGEYQTYKSESGAFVREHFFNTPELKAMVADWSDDDIWNLNRGGHDPHKIYAAFHEASNTKGAPTVILAKTIKG YGMGEAGQAMNITHQQKKLPVEQLKRFRDQFRLPISDDVIADVPYLKFEEGSKELEYMRAHRQALGGYLPQRRQKAQSLP VPALDAFEPLLKGTGEGREISTTMAFVRILNILLKDKALGKRVVPIVPDESRTFGMEGLFRQIGIWNQQGQKYVPEDSDQ LMFYKESETGQILQEGINEAGGMCDWIAAATSYSTHGEIMVPFYIFYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTT LNGEGLQHEDGHSLLWAASVPNCVSYDPTFGYELAVIIQNGLQRMVADQEDVYYYVTVMNENYEHPAIPQGEHVAADIIK GMYAFRKAEADQKAPRVQLLGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGHEVERWNLLNPTEERRLSHVQ RLLKDTQGPVIASTDYVRALADQIRGQIDRRYVVLGTDGYGRSDTRKALRHFFEVDRHWVTVAALNALADEGTIDRKVVA EAIKKYGLDPSKPNPMTV >Mature_897_residues SAVPNEVMKYVAAEQDDDSQETVEWLEALDGVISSVGPGRAHYLIEKQIEFARMHGEHLPFSANTPYINTIPVERQAKIP GDQDVEHRIRSYTRWNAIAMVLRAGKDTNVGGHIASFASAATLYDVGFNHFWHAPSEAHGGDLVFVQGHSSPGVYSRAFL LGRLSEEQLDNFRQEVGGNGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLEARGITKTAGRKVWAFLGDGET DEPESLGAIGMASRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDSLLARDKSGALMRR MMEVVDGEYQTYKSESGAFVREHFFNTPELKAMVADWSDDDIWNLNRGGHDPHKIYAAFHEASNTKGAPTVILAKTIKGY GMGEAGQAMNITHQQKKLPVEQLKRFRDQFRLPISDDVIADVPYLKFEEGSKELEYMRAHRQALGGYLPQRRQKAQSLPV PALDAFEPLLKGTGEGREISTTMAFVRILNILLKDKALGKRVVPIVPDESRTFGMEGLFRQIGIWNQQGQKYVPEDSDQL MFYKESETGQILQEGINEAGGMCDWIAAATSYSTHGEIMVPFYIFYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTTL NGEGLQHEDGHSLLWAASVPNCVSYDPTFGYELAVIIQNGLQRMVADQEDVYYYVTVMNENYEHPAIPQGEHVAADIIKG MYAFRKAEADQKAPRVQLLGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGHEVERWNLLNPTEERRLSHVQR LLKDTQGPVIASTDYVRALADQIRGQIDRRYVVLGTDGYGRSDTRKALRHFFEVDRHWVTVAALNALADEGTIDRKVVAE AIKKYGLDPSKPNPMTV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=885, Percent_Identity=59.5480225988701, Blast_Score=1078, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 100510; Mature: 100379
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVPNEVMKYVAAEQDDDSQETVEWLEALDGVISSVGPGRAHYLIEKQIEFARMHGEHL CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC PFSANTPYINTIPVERQAKIPGDQDVEHRIRSYTRWNAIAMVLRAGKDTNVGGHIASFAS CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AATLYDVGFNHFWHAPSEAHGGDLVFVQGHSSPGVYSRAFLLGRLSEEQLDNFRQEVGGN HHHHHHCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC GISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLEARGITKTAGRKVWAFLGDGE CCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCCC TDEPESLGAIGMASRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKV CCCCHHHCHHCHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE IWGSRWDSLLARDKSGALMRRMMEVVDGEYQTYKSESGAFVREHFFNTPELKAMVADWSD ECCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCCCCHHHEEEECCCC DDIWNLNRGGHDPHKIYAAFHEASNTKGAPTVILAKTIKGYGMGEAGQAMNITHQQKKLP CCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCHHHHCCC VEQLKRFRDQFRLPISDDVIADVPYLKFEEGSKELEYMRAHRQALGGYLPQRRQKAQSLP HHHHHHHHHHHCCCCCCCHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC VPALDAFEPLLKGTGEGREISTTMAFVRILNILLKDKALGKRVVPIVPDESRTFGMEGLF CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHH RQIGIWNQQGQKYVPEDSDQLMFYKESETGQILQEGINEAGGMCDWIAAATSYSTHGEIM HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEE VPFYIFYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSLLWAASV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCEEEEECCC PNCVSYDPTFGYELAVIIQNGLQRMVADQEDVYYYVTVMNENYEHPAIPQGEHVAADIIK CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH GMYAFRKAEADQKAPRVQLLGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGH HHHHHHHHCCHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHCCC EVERWNLLNPTEERRLSHVQRLLKDTQGPVIASTDYVRALADQIRGQIDRRYVVLGTDGY CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEECCCC GRSDTRKALRHFFEVDRHWVTVAALNALADEGTIDRKVVAEAIKKYGLDPSKPNPMTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SAVPNEVMKYVAAEQDDDSQETVEWLEALDGVISSVGPGRAHYLIEKQIEFARMHGEHL CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC PFSANTPYINTIPVERQAKIPGDQDVEHRIRSYTRWNAIAMVLRAGKDTNVGGHIASFAS CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AATLYDVGFNHFWHAPSEAHGGDLVFVQGHSSPGVYSRAFLLGRLSEEQLDNFRQEVGGN HHHHHHCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC GISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLEARGITKTAGRKVWAFLGDGE CCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCCC TDEPESLGAIGMASRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKV CCCCHHHCHHCHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE IWGSRWDSLLARDKSGALMRRMMEVVDGEYQTYKSESGAFVREHFFNTPELKAMVADWSD ECCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCCCCHHHEEEECCCC DDIWNLNRGGHDPHKIYAAFHEASNTKGAPTVILAKTIKGYGMGEAGQAMNITHQQKKLP CCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCHHHHCCC VEQLKRFRDQFRLPISDDVIADVPYLKFEEGSKELEYMRAHRQALGGYLPQRRQKAQSLP HHHHHHHHHHHCCCCCCCHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC VPALDAFEPLLKGTGEGREISTTMAFVRILNILLKDKALGKRVVPIVPDESRTFGMEGLF CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHH RQIGIWNQQGQKYVPEDSDQLMFYKESETGQILQEGINEAGGMCDWIAAATSYSTHGEIM HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEE VPFYIFYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSLLWAASV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCEEEEECCC PNCVSYDPTFGYELAVIIQNGLQRMVADQEDVYYYVTVMNENYEHPAIPQGEHVAADIIK CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH GMYAFRKAEADQKAPRVQLLGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGH HHHHHHHHCCHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHCCC EVERWNLLNPTEERRLSHVQRLLKDTQGPVIASTDYVRALADQIRGQIDRRYVVLGTDGY CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEECCCC GRSDTRKALRHFFEVDRHWVTVAALNALADEGTIDRKVVAEAIKKYGLDPSKPNPMTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]