| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027915
Identifier: 238027915
GI number: 238027915
Start: 2588585
End: 2590189
Strand: Reverse
Name: 238027915
Synonym: bglu_1g23570
Alternate gene names: NA
Gene position: 2590189-2588585 (Counterclockwise)
Preceding gene: 238027916
Following gene: 238027914
Centisome position: 66.3
GC content: 54.14
Gene sequence:
>1605_bases TTGAAACTGTCCACCCGCATCGCTCAATCGCGTCACGGCGTTTACTACTACCGTCACCAGTTCACGGTAGCTGGCAAGCG CTGCGAAAAGCGGTTCTCACTGCGCACAAAGCACCCAGCCATCGCCAAGAACAAGGCGCTGTTGGTTTCCGCTATCCTTG TAGCGAACCGAACCGGGGTGTACATGAGTGAGCCAAACGACGAGTCCATAGAGAACATCCTCAAGCGCATCGATGCCGAT GCGCGCAATTTGGAGATCGTCTATAGCTCGCCAGATGGTCGCAACATCACCATGAAGGCAGATCCCAACGTGCCGGGTGA CTTGGATGCCCTCATGCGAGCTTCTGAGGCGTTTTGGAATAGTGAGCTTGGGCAATCGTTCAAGCATGCGCGAGAAACCG GTGCGGCGGCACAACCTGCCGCGCCAGCGCAGCCCGTTCCGGCAGTTCCTGCCCAAGTTATCATCCAGACTCCTCAGGTA AGCATCTCGGAGCCTTCCAAGCCTGTTCCTGCCGGTCTGACAGTGCAGGAAGCGATCAGCCGCTTTGCGACCCGTCACGG GGCTAAACTCGCACCCAAGACGCTCTACGAGTATCGACAGCACCAACTGCATTTCCAAAGCTGGCTCGCCACGCGCAAGA GCACGGAGCACTATCCGATCCGCGATGTGATACGCGAGGACATTGCCGTTTGGATTGATGACCTGCTGGCAAAGGGAATC ACGCATTCCACCGTCCAGCAAAAATATCTTCGTCCCGTCTCTGGTTTATTCGAACTGGCGCAGTCCATGGGTTCCTTCCC TGAGGGGGTGCAATTTCCATCCCGTGGGCACAAGCTGTTCACCAAGAAGGATGCGAAGAAGGTGAGGGATAAGAATGGCT ACAAGCCGTTCACCGACGAGGATTTGAAGGTCATCTTCGATTCCGCTGCCTATCTGGTACAGAAAAACCCAACGGACTAC TGGCTTCCATTGCTCGGTCTGTTCACTGGCGGGCGCATCAATGAGCTTTGTCAGCTTCTGATTCAGGACGTGAGGAAGGT CGGCGAGATTTGGGCGATCTCGATCACCGATGACGACGAGTGCCAGCGCCTCAAGACGCCTGCAGCAAAACGCACGATCC CGATCCATCCCCAGCTCATCAAACTGGGCTTTCTGGATTTCGTTGCGGACATGAAACCGTTTGGCGGGATGCTGTTCCCT TATCTGACTGCCAACAAGTTTGGGAACTTCAGCGAAACGCCTAGCGAGCGCTGGGGTGATTATCTGGACAAGGTTGGTAT CGCTGACAGGAAGAAGGTATTCCACTCATTCCGGTCGACTTCCAACAACCGCCTCAAGCAAAACGGGGTTCCTGAGGAAA CGCGCTGCCAGTTCATTGGTCATGAGCATGACACGGTGAATTCCAAGGCGTATTCGGAAGAACATAGCGTGGCGTATCTC TTGGAGAATGTTGCCGGGAAATTAAGCTACAACATCGACTTTGAGAGAATTCCGTACCCACGGGATCTCATCGTGACAAC GACAAAGCAAAAGCTTATCGTGAAGTTGAAGCGTGAGCGTCATCAAGAGGCTGCTGAGAAGCGTAAGATGGAAGGCATTA AATAA
Upstream 100 bases:
>100_bases GCGGGTAAGCCCCTGATTTTTCTAGGAAAATCAGGGGCTTTTTCTTTGTCCGTCTCTTGCGGTGTCACTCGTAGGGGTAC CTCTTCCTCAGGAAGAGACC
Downstream 100 bases:
>100_bases AAATTGTGGGGTCACTATGTATATCAGCAGGAAAGACGCAGGGGAATTGATTTTTCAGCATCGTCAGGATGCTATTGCGG ACGTTCGTGGGGAGGCTGAT
Product: phage integrase
Products: NA
Alternate protein names: Integrase; Phage-Related Integrase; Phage Integrase Family Protein; Phage Integrase; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase; Phage Integerase; Integrase/Resolvase Recombinase Protein; Phage Integrase Domain/SAM Domain-Containing Protein; Integrase Domain-Containing Protein; Integrase Domain Protein SAM Domain Protein; DNA-Binfing Protein
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MKLSTRIAQSRHGVYYYRHQFTVAGKRCEKRFSLRTKHPAIAKNKALLVSAILVANRTGVYMSEPNDESIENILKRIDAD ARNLEIVYSSPDGRNITMKADPNVPGDLDALMRASEAFWNSELGQSFKHARETGAAAQPAAPAQPVPAVPAQVIIQTPQV SISEPSKPVPAGLTVQEAISRFATRHGAKLAPKTLYEYRQHQLHFQSWLATRKSTEHYPIRDVIREDIAVWIDDLLAKGI THSTVQQKYLRPVSGLFELAQSMGSFPEGVQFPSRGHKLFTKKDAKKVRDKNGYKPFTDEDLKVIFDSAAYLVQKNPTDY WLPLLGLFTGGRINELCQLLIQDVRKVGEIWAISITDDDECQRLKTPAAKRTIPIHPQLIKLGFLDFVADMKPFGGMLFP YLTANKFGNFSETPSERWGDYLDKVGIADRKKVFHSFRSTSNNRLKQNGVPEETRCQFIGHEHDTVNSKAYSEEHSVAYL LENVAGKLSYNIDFERIPYPRDLIVTTTKQKLIVKLKRERHQEAAEKRKMEGIK
Sequences:
>Translated_534_residues MKLSTRIAQSRHGVYYYRHQFTVAGKRCEKRFSLRTKHPAIAKNKALLVSAILVANRTGVYMSEPNDESIENILKRIDAD ARNLEIVYSSPDGRNITMKADPNVPGDLDALMRASEAFWNSELGQSFKHARETGAAAQPAAPAQPVPAVPAQVIIQTPQV SISEPSKPVPAGLTVQEAISRFATRHGAKLAPKTLYEYRQHQLHFQSWLATRKSTEHYPIRDVIREDIAVWIDDLLAKGI THSTVQQKYLRPVSGLFELAQSMGSFPEGVQFPSRGHKLFTKKDAKKVRDKNGYKPFTDEDLKVIFDSAAYLVQKNPTDY WLPLLGLFTGGRINELCQLLIQDVRKVGEIWAISITDDDECQRLKTPAAKRTIPIHPQLIKLGFLDFVADMKPFGGMLFP YLTANKFGNFSETPSERWGDYLDKVGIADRKKVFHSFRSTSNNRLKQNGVPEETRCQFIGHEHDTVNSKAYSEEHSVAYL LENVAGKLSYNIDFERIPYPRDLIVTTTKQKLIVKLKRERHQEAAEKRKMEGIK >Mature_534_residues MKLSTRIAQSRHGVYYYRHQFTVAGKRCEKRFSLRTKHPAIAKNKALLVSAILVANRTGVYMSEPNDESIENILKRIDAD ARNLEIVYSSPDGRNITMKADPNVPGDLDALMRASEAFWNSELGQSFKHARETGAAAQPAAPAQPVPAVPAQVIIQTPQV SISEPSKPVPAGLTVQEAISRFATRHGAKLAPKTLYEYRQHQLHFQSWLATRKSTEHYPIRDVIREDIAVWIDDLLAKGI THSTVQQKYLRPVSGLFELAQSMGSFPEGVQFPSRGHKLFTKKDAKKVRDKNGYKPFTDEDLKVIFDSAAYLVQKNPTDY WLPLLGLFTGGRINELCQLLIQDVRKVGEIWAISITDDDECQRLKTPAAKRTIPIHPQLIKLGFLDFVADMKPFGGMLFP YLTANKFGNFSETPSERWGDYLDKVGIADRKKVFHSFRSTSNNRLKQNGVPEETRCQFIGHEHDTVNSKAYSEEHSVAYL LENVAGKLSYNIDFERIPYPRDLIVTTTKQKLIVKLKRERHQEAAEKRKMEGIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60488; Mature: 60488
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSTRIAQSRHGVYYYRHQFTVAGKRCEKRFSLRTKHPAIAKNKALLVSAILVANRTGV CCCHHHHHHHCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHCCCCE YMSEPNDESIENILKRIDADARNLEIVYSSPDGRNITMKADPNVPGDLDALMRASEAFWN EECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHH SELGQSFKHARETGAAAQPAAPAQPVPAVPAQVIIQTPQVSISEPSKPVPAGLTVQEAIS HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCHHHHHH RFATRHGAKLAPKTLYEYRQHQLHFQSWLATRKSTEHYPIRDVIREDIAVWIDDLLAKGI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC THSTVQQKYLRPVSGLFELAQSMGSFPEGVQFPSRGHKLFTKKDAKKVRDKNGYKPFTDE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCC DLKVIFDSAAYLVQKNPTDYWLPLLGLFTGGRINELCQLLIQDVRKVGEIWAISITDDDE HHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHH CQRLKTPAAKRTIPIHPQLIKLGFLDFVADMKPFGGMLFPYLTANKFGNFSETPSERWGD HHHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH YLDKVGIADRKKVFHSFRSTSNNRLKQNGVPEETRCQFIGHEHDTVNSKAYSEEHSVAYL HHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCCCCHHHCHHHHHHHH LENVAGKLSYNIDFERIPYPRDLIVTTTKQKLIVKLKRERHQEAAEKRKMEGIK HHHHHHHEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKLSTRIAQSRHGVYYYRHQFTVAGKRCEKRFSLRTKHPAIAKNKALLVSAILVANRTGV CCCHHHHHHHCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHCCCCE YMSEPNDESIENILKRIDADARNLEIVYSSPDGRNITMKADPNVPGDLDALMRASEAFWN EECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHH SELGQSFKHARETGAAAQPAAPAQPVPAVPAQVIIQTPQVSISEPSKPVPAGLTVQEAIS HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCHHHHHH RFATRHGAKLAPKTLYEYRQHQLHFQSWLATRKSTEHYPIRDVIREDIAVWIDDLLAKGI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC THSTVQQKYLRPVSGLFELAQSMGSFPEGVQFPSRGHKLFTKKDAKKVRDKNGYKPFTDE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCC DLKVIFDSAAYLVQKNPTDYWLPLLGLFTGGRINELCQLLIQDVRKVGEIWAISITDDDE HHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHH CQRLKTPAAKRTIPIHPQLIKLGFLDFVADMKPFGGMLFPYLTANKFGNFSETPSERWGD HHHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH YLDKVGIADRKKVFHSFRSTSNNRLKQNGVPEETRCQFIGHEHDTVNSKAYSEEHSVAYL HHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCCCCHHHCHHHHHHHH LENVAGKLSYNIDFERIPYPRDLIVTTTKQKLIVKLKRERHQEAAEKRKMEGIK HHHHHHHEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA