| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is lysC [H]
Identifier: 238027916
GI number: 238027916
Start: 2590519
End: 2591733
Strand: Reverse
Name: lysC [H]
Synonym: bglu_1g23580
Alternate gene names: 238027916
Gene position: 2591733-2590519 (Counterclockwise)
Preceding gene: 238027917
Following gene: 238027915
Centisome position: 66.34
GC content: 63.37
Gene sequence:
>1215_bases ATGGGCTCGGTCGAGCGCATCAAGAACGTCGCGAAACGCGTCGCGAAATGGCATCGGGCCGGCCACCAGATGGTGGTCGT GCCGTCGGCGATGTCCGGCGAAACGAACCGCCTGCTCGGTCTCGCGAAAGAGATCTCGAGCCGGCCCGATCCGCGCGAAC TCGACATGATCGCGTCGACGGGCGAGCAGGTCAGCGTCGGTCTGCTGTCGATCGCGTTGCAGGAACTCGGCATTCCCGCC GTCAGCTACGCGGGCTGGCAGGTGCCGATCAAGACCGACGATGCATACACGAAGGCGCGCATTCAGTCGATCGACGACGA GCGCGTGAAGCGCGACCTCGCGGCGGGCAAGGTGGTGATGATCACCGGCTTCCAGGGCGTGGACCCGGCCGGCAACATCA CCACGCTCGGCCGCGGCGGCTCGGACACCTCGGCGGTCGCGGTGGCCGCGGCGCTGCAGGCCGAGGAATGCCTGATCTAC ACCGATGTCGATGGCGTCTACACCACCGATCCGCGCGTGGTGGACGGCGCGCGCCGCCTGGACTACGTGACTTTCGAGGA GATGCTGGAAATGGCCAGCCTCGGCTCGAAGGTGCTGCAGATCCGCTCGGTCGAATTCGCCGGCAAGTACCGTGTGAAGA CGCGTGTGCTGTCTAGCCTGACCGATCCCCTCATCGCTCTCGACGAAGAAATGAAGTCGGGCACCCTGATTACTTTTGAA GAAGACGAGACCATGGAAAAGGCAGTCATTTCCGGCATCGCATTTCAGCGCGACGAAGCGCGCATCGTGGTGATGGGCGT GCCCGACAAGCCCGGTATCGCCTATCAGATCCTTGGCCCGGTGGCCGACGCGAACATCGATGTCGACATGATCATCCAGA ACCAGAGCGTGGCCGGCAAGACCGACTTCACGTTCACGGTCGGCCGTGGCGACTACCAGCGCGCGATGGAGATCCTGACC AACCAGGTCAAGGGTCACGTCAACGCCGAGCAGGTGCTGGGCGATCCGAAGGTGTCGAAGGTGTCGGTGGTCGGCGTCGG CATGCGCTCGCACGTCGGCGTGGCGAGCACGGCGTTCCGCACGCTGTCGGAAGAGGGCATCAACATCCAGATGATCTCGA CCTCCGAAATCAAGATCTCGATCCTGATCGACGAGAAGTACATGGAACTCGCGGTACGCGCGCTGCACAAGGCGTTCGAA CTCGATCAGGCGTAA
Upstream 100 bases:
>100_bases CCGAACGGTGGCGCGGCTTGCGGCGCAGTGTATCTGCGCGGTCAATTTCCAGTTCAGAACGACAATGTCACTCATCGTAC ATAAATACGGCGGCACCTCG
Downstream 100 bases:
>100_bases GCGGCGCGAATTACCGCCGGATTCGTGGCCGCGGCGGCGCGAAAAAGCGTGCCGAAACATTTGACCTTCGTGCCGGGGCC ATATAGAATCTTGTTCTCGT
Product: asparate kinase, monofunctional class
Products: NA
Alternate protein names: Aspartate kinase [H]
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MGSVERIKNVAKRVAKWHRAGHQMVVVPSAMSGETNRLLGLAKEISSRPDPRELDMIASTGEQVSVGLLSIALQELGIPA VSYAGWQVPIKTDDAYTKARIQSIDDERVKRDLAAGKVVMITGFQGVDPAGNITTLGRGGSDTSAVAVAAALQAEECLIY TDVDGVYTTDPRVVDGARRLDYVTFEEMLEMASLGSKVLQIRSVEFAGKYRVKTRVLSSLTDPLIALDEEMKSGTLITFE EDETMEKAVISGIAFQRDEARIVVMGVPDKPGIAYQILGPVADANIDVDMIIQNQSVAGKTDFTFTVGRGDYQRAMEILT NQVKGHVNAEQVLGDPKVSKVSVVGVGMRSHVGVASTAFRTLSEEGINIQMISTSEIKISILIDEKYMELAVRALHKAFE LDQA
Sequences:
>Translated_404_residues MGSVERIKNVAKRVAKWHRAGHQMVVVPSAMSGETNRLLGLAKEISSRPDPRELDMIASTGEQVSVGLLSIALQELGIPA VSYAGWQVPIKTDDAYTKARIQSIDDERVKRDLAAGKVVMITGFQGVDPAGNITTLGRGGSDTSAVAVAAALQAEECLIY TDVDGVYTTDPRVVDGARRLDYVTFEEMLEMASLGSKVLQIRSVEFAGKYRVKTRVLSSLTDPLIALDEEMKSGTLITFE EDETMEKAVISGIAFQRDEARIVVMGVPDKPGIAYQILGPVADANIDVDMIIQNQSVAGKTDFTFTVGRGDYQRAMEILT NQVKGHVNAEQVLGDPKVSKVSVVGVGMRSHVGVASTAFRTLSEEGINIQMISTSEIKISILIDEKYMELAVRALHKAFE LDQA >Mature_403_residues GSVERIKNVAKRVAKWHRAGHQMVVVPSAMSGETNRLLGLAKEISSRPDPRELDMIASTGEQVSVGLLSIALQELGIPAV SYAGWQVPIKTDDAYTKARIQSIDDERVKRDLAAGKVVMITGFQGVDPAGNITTLGRGGSDTSAVAVAAALQAEECLIYT DVDGVYTTDPRVVDGARRLDYVTFEEMLEMASLGSKVLQIRSVEFAGKYRVKTRVLSSLTDPLIALDEEMKSGTLITFEE DETMEKAVISGIAFQRDEARIVVMGVPDKPGIAYQILGPVADANIDVDMIIQNQSVAGKTDFTFTVGRGDYQRAMEILTN QVKGHVNAEQVLGDPKVSKVSVVGVGMRSHVGVASTAFRTLSEEGINIQMISTSEIKISILIDEKYMELAVRALHKAFEL DQA
Specific function: Catalyzes 2 nonconsecutive reactions in the common biosynthetic pathway leading from Asp to diaminopimelate and Lys, to Met, and to Thr and Ile. [C]
COG id: COG0527
COG function: function code E; Aspartokinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ACT domains [H]
Homologues:
Organism=Escherichia coli, GI1786183, Length=316, Percent_Identity=30.6962025316456, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1790455, Length=381, Percent_Identity=28.0839895013123, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1790376, Length=160, Percent_Identity=31.25, Blast_Score=65, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6320893, Length=402, Percent_Identity=26.865671641791, Blast_Score=112, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR001048 - InterPro: IPR005260 - InterPro: IPR001341 - InterPro: IPR018042 [H]
Pfam domain/function: PF00696 AA_kinase; PF01842 ACT [H]
EC number: =2.7.2.4 [H]
Molecular weight: Translated: 43762; Mature: 43631
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVERIKNVAKRVAKWHRAGHQMVVVPSAMSGETNRLLGLAKEISSRPDPRELDMIAST CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCC GEQVSVGLLSIALQELGIPAVSYAGWQVPIKTDDAYTKARIQSIDDERVKRDLAAGKVVM CCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEE ITGFQGVDPAGNITTLGRGGSDTSAVAVAAALQAEECLIYTDVDGVYTTDPRVVDGARRL EECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCCCEECCHHHC DYVTFEEMLEMASLGSKVLQIRSVEFAGKYRVKTRVLSSLTDPLIALDEEMKSGTLITFE CHHHHHHHHHHHHHCHHHEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEC EDETMEKAVISGIAFQRDEARIVVMGVPDKPGIAYQILGPVADANIDVDMIIQNQSVAGK CCHHHHHHHHHHHHEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC TDFTFTVGRGDYQRAMEILTNQVKGHVNAEQVLGDPKVSKVSVVGVGMRSHVGVASTAFR CCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECHHHCCCHHHHHHH TLSEEGINIQMISTSEIKISILIDEKYMELAVRALHKAFELDQA HHHHCCCEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GSVERIKNVAKRVAKWHRAGHQMVVVPSAMSGETNRLLGLAKEISSRPDPRELDMIAST CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCC GEQVSVGLLSIALQELGIPAVSYAGWQVPIKTDDAYTKARIQSIDDERVKRDLAAGKVVM CCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEE ITGFQGVDPAGNITTLGRGGSDTSAVAVAAALQAEECLIYTDVDGVYTTDPRVVDGARRL EECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCCCEECCHHHC DYVTFEEMLEMASLGSKVLQIRSVEFAGKYRVKTRVLSSLTDPLIALDEEMKSGTLITFE CHHHHHHHHHHHHHCHHHEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEC EDETMEKAVISGIAFQRDEARIVVMGVPDKPGIAYQILGPVADANIDVDMIIQNQSVAGK CCHHHHHHHHHHHHEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC TDFTFTVGRGDYQRAMEILTNQVKGHVNAEQVLGDPKVSKVSVVGVGMRSHVGVASTAFR CCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECHHHCCCHHHHHHH TLSEEGINIQMISTSEIKISILIDEKYMELAVRALHKAFELDQA HHHHCCCEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]