| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is fimD [H]
Identifier: 238027860
GI number: 238027860
Start: 2501435
End: 2503852
Strand: Direct
Name: fimD [H]
Synonym: bglu_1g22910
Alternate gene names: 238027860
Gene position: 2501435-2503852 (Clockwise)
Preceding gene: 238027859
Following gene: 238027861
Centisome position: 64.03
GC content: 68.73
Gene sequence:
>2418_bases GTGTTGCTGTTCGCCACCGCCGGCACGGCCAGAAGCGGCGACGCACTGCGTTTCAACAACGACTTCCTGACGCTGGACGG TGTGGCACTACCAGTCGATCTCGATTACTTCGCAAAGGAAAACAGCGTGTTGCCAGGCCGCCACCCTACCCTCATGACGT TCAATCGCGAGCCAACCGGATTGCAAATGGTCCGCTTCGTCGCGAGCGGCGACCAGTACGAGCACGTCGTCCCCTGTATT ACAGGGGCGATGCTCGACGACTGGGGGGTCGACACGGCTCGGCTGCCCGCCAGCGCTGACAGCTGCATCGACCTCGAATC GGCGATTCCGGGCGCGACCGTGCGCTACCAGGCACACAATCAGTCGCTGTTCGTGACGGTGCCGCAAACCGCGCTGCTCC ACCACGCGGCGGGCGCCGTCGATCCGCGCCTGTGGAACTACGGCGAAACCGCGGCCGTGGCGAACTACGACGTCAGCGTC AACCACGATGCCATCCAGGGCGACACCGGCGCGACGCTGAACCTCGACACGGCCGTCAACGCAGGCCGCTGGCTATTGCG CAATCGCAACTACGCGAACCTCGATCGTGGCCGGACCACCTGGCAGCCGGCCGAGTTTTCGCTGTCGACGCCGCTCGCGC GGCTCGGCGGCAGCTTGACGGCCGGCGACACGTCGTCGCCGAGCGACCTGTTCGACAGTTTCCGGTTTCGCGGCGTCACG CTGCAGTCGGACGACGGCATGGTGCCGGACAGCCTGCAGGGGTATGCGCCCGTGATTCGCGGCGTCGCCACCAGCGAATC GCGGGTCACGATCCGCCAGAACGGCGGCACGGTCTACGACAAGTACGTGCCGCCCGGCCCGTATGCGATCGACGATCTCG GCGGCGCGGCGGCAGGCGCCGATCTCGACGTGACGATCACCGACGCGGCCGGCAGGGTCACGCACTACCGTCAGCCCTAC AACACGCTGCCGATCATGCTGCGCCAGGGCCGCATGCGCTACCGCATCGCGGCCGGCACCTACGACGGCTACGGCGACCG TCATCACGACCCGTTCGTCTGGGCCGAGGCCGAGCGCGGCATGGGCAACCGGATCACGCTGTTCGGCGGCATGATCCAGG CATCCCGCTACACGGCCCGCAGCCTCGGCGCGGGCCTCGATCTGGGCCGCGCCGGCGCGGTCTCGGTCGACCTCGTGCGC GCCGCGGCCGCGTTGACGGGCAACCTGCCGTCGATCGCGTACCGGCTGCGCTACGCGAACTCGATCACGCGCCTGCGCTT CAATGCGAATGCCACGTTGCGCCGCTACACGAACGCGGCGTTCCTGAATTTCGACGATGCGATGGGCAACACGCTGCAGG CCTCCGCCGAGCACGGGGTGCGTTCGCACGAGCAGCTCACCGTCAACCAGGGGCTCGGCGGCGCCCTCGCGATGTATGCC TCATACGACCATCGCACGTATTTCGGCGGCCGGCCCTCGGACCGCATCCTGCAGATCGGCCTGAGCGGTTCGTACCGCGC GGCGAGCTACACCCTGAGCGTCGGCAACATCCGCCAGCGCGGCCGCGACGTGAGCCACTATCTGCTCCTCACGCTGAGCC TGCCGCTCGGCCGCGCGGCCAACGTCAGCTATTCGGGCAACTACGACCGGCGGGCGGGCATGTCGCAGCAGGCCAGCGTG TTCGGTTCGCTGTTGCGCGACGGGCGGCTCAGCTACACCGCCAATGCGTCGCGCACGCGTAACGACAGCAGCTTTTACGC GTCCACCACCTACGCCGGCGCCAAGGGCATGGTCGCGCTGTCGCAGACCTTCATGCAGCGCGCCGCGCGTACCGTGGCCG AGGTCAAGGGCGGCATCGTCGGCGATGCGCGCGGCGTGCTGCTCTCGCAGCACGTCGACGAAACCTCCGCCATCGTCGAT GCGCCCGGCCTGCGCGGCGCGCTCGTCAACGGCAACCCCGGGATTCGCACCAATCGCGACGGCCGCGCGGTGGTGACCGG CCTGATGCCGTACCGGCGCAACCGAATCCGGCTCGACGAACCCCAGGGCCGCGACGATGACGACAACCAGGCCACGCTGC TGCAATCGATCGCCACCACGGTCCCCACGCGCGGCGCGATCACGCGGCTGCACTTCCAGACCGCGATCGGCTGGCGATCC TTGAACACCCTGCTCGACACGCAAGGCAAGCCGCTGCCGTTCGGGGCCATGATCCGCGACGCTCGGCACCATGTGGTCAG CGTGGTGGGGCCGCTCGGGCGCGTCTGGCTGACCGGCCTGCGCGACGAGAACGACTTTATCGCGACGCTCGGCGACGCGC GTCACACGCTGTGCCGGTTCCGGATCACGCGCCAAGAACGCAACCAGCCGCTCACCTGCCAGCCGGCCCGCTCGCTTGCG GCCCGCCACGCGCCATGA
Upstream 100 bases:
>100_bases GTCCGAATCCAATCGATCAACGACTACGGCGGCATCAGCGCGCCCTTCACGCCGCCGCTCGACGGCCCGGTGTCCACGCC GCACTAGGCTCGCGCTCGCC
Downstream 100 bases:
>100_bases TCCACCGCGGCCGGCACCTCTGTCTGCTGATCCTGCTGCTGGGCCTCGCTCCGGCCGTCCACGCGGGCTGCACGCGCAAC CCCGACTGGGGCGGCACGCG
Product: putative fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA ARHAP
Sequences:
>Translated_805_residues MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA ARHAP >Mature_805_residues MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA ARHAP
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=846, Percent_Identity=32.2695035460993, Blast_Score=371, Evalue=1e-104, Organism=Escherichia coli, GI1786744, Length=831, Percent_Identity=30.806257521059, Blast_Score=341, Evalue=1e-94, Organism=Escherichia coli, GI1789533, Length=768, Percent_Identity=31.5104166666667, Blast_Score=340, Evalue=2e-94, Organism=Escherichia coli, GI1787172, Length=824, Percent_Identity=29.6116504854369, Blast_Score=318, Evalue=9e-88, Organism=Escherichia coli, GI1788427, Length=759, Percent_Identity=29.2490118577075, Blast_Score=268, Evalue=7e-73, Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=26.8779342723005, Blast_Score=248, Evalue=1e-66, Organism=Escherichia coli, GI87081778, Length=772, Percent_Identity=25.7772020725389, Blast_Score=205, Evalue=9e-54, Organism=Escherichia coli, GI1789610, Length=785, Percent_Identity=22.9299363057325, Blast_Score=111, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 87263; Mature: 87263
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTG CEEEEECCCCCCCCEEEECCCEEEECCEEEEECHHHHCCCCCCCCCCCCEEEEECCCCCH LQMVRFVASGDQYEHVVPCITGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHN HHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCEECCCCCCCCEEHHHCCCCCEEEEEECC QSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSVNHDAIQGDTGATLNLDTAVN CEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC AGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCHHHHHHHHHEEEEE LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGA EECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCCCCC DLDVTITDAAGRVTHYRQPYNTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERG CEEEEEECCCCCCCCCCCCCCCHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCC MGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVRAAAALTGNLPSIAYRLRYAN CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC SITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA CEEEEEECCCCEEEEECCEEEEEEHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEEEEE SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAA ECCCCEECCCCCCCEEEEEECCCCCEEEEEEEEEHHHHHCCCCCCEEEEEEEECCCCCCC NVSYSGNYDRRAGMSQQASVFGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVAL CCEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHH SQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVDAPGLRGALVNGNPGIRTNRD HHHHHHHHHHHHHHHCCCEEECCCCEEEHHCCCCHHHEEECCCCCEEEECCCCCCCCCCC GRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS CCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHCHHH LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRF HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEECHHHHHHHHE RITRQERNQPLTCQPARSLAARHAP EEEHHHCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTG CEEEEECCCCCCCCEEEECCCEEEECCEEEEECHHHHCCCCCCCCCCCCEEEEECCCCCH LQMVRFVASGDQYEHVVPCITGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHN HHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCEECCCCCCCCEEHHHCCCCCEEEEEECC QSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSVNHDAIQGDTGATLNLDTAVN CEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC AGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCHHHHHHHHHEEEEE LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGA EECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCCCCC DLDVTITDAAGRVTHYRQPYNTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERG CEEEEEECCCCCCCCCCCCCCCHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCC MGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVRAAAALTGNLPSIAYRLRYAN CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC SITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA CEEEEEECCCCEEEEECCEEEEEEHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEEEEE SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAA ECCCCEECCCCCCCEEEEEECCCCCEEEEEEEEEHHHHHCCCCCCEEEEEEEECCCCCCC NVSYSGNYDRRAGMSQQASVFGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVAL CCEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHH SQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVDAPGLRGALVNGNPGIRTNRD HHHHHHHHHHHHHHHCCCEEECCCCEEEHHCCCCHHHEEECCCCCEEEECCCCCCCCCCC GRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS CCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHCHHH LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRF HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEECHHHHHHHHE RITRQERNQPLTCQPARSLAARHAP EEEHHHCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1970114; 7610040; 9278503 [H]