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The map label for this gene is mrkD [H]

Identifier: 238027861

GI number: 238027861

Start: 2503849

End: 2504802

Strand: Direct

Name: mrkD [H]

Synonym: bglu_1g22920

Alternate gene names: 238027861

Gene position: 2503849-2504802 (Clockwise)

Preceding gene: 238027860

Following gene: 238027862

Centisome position: 64.09

GC content: 68.03

Gene sequence:

>954_bases
ATGATCCACCGCGGCCGGCACCTCTGTCTGCTGATCCTGCTGCTGGGCCTCGCTCCGGCCGTCCACGCGGGCTGCACGCG
CAACCCCGACTGGGGCGGCACGCGAATCGTGGCGGCGCCGGGCGGGTCGTTTTCCGCGGATCCCGCACTGCCGGTGGGAA
CCGTGATCACGGAAGGCCGTCTGACGATGCCCACGCCGAGCAAAGCGACGCGGCAATACATACCGATCGCACGCTGCTCG
GTCGGCACGACGGAGATTTTCGTCGGCACGCGGCCGCTCTGGTCCGGCGACTTGTTCTCGACTAACGTGCCGGGGATCGG
CTATCGCTTGATCTATCCGAACGGATGGCACGCTCCGCAGGCCATCAGCAACACCAATAAAGGTTACCTGCTCTACTATC
CGGCAGGGGATTTCCAGATCCAGTTCGTGAAGACCGGCGCGATCAGCCCGGGCATCGTACCCGCCGGCCGGTACGGCTTC
GACAGCGTGAACGGCTACGAGGATTTCATCACTTTCATGCTGCGCGCGCCGATCGTCGTCACCGTGCCGACCTGCCGCGT
CGCCGCCGGCTCGGTGCAGCAGACCGTGAACTTCGGCGACGTCGCCAGCACCGATTTCTCCGGGATCGGCACCGGCGCGG
CCAGCCGCCCGTTCTCGATCCGGCTGCAGTGCGACGCCGCCGTCTCGGCGGTCGGGCTGACCTTCGACGCCGCCCCGGAC
CCCTCGGGCCAGCCCGGCACGCTGCGCCTGAGCGGCGGCCGGAGTGCGGCCAGCGGCGTCGGCATCCAGGTGCTCGGCGC
CGACGGCAAGCCGATCGACTGGCACCGGCGCATAGCGCTGCCGATCGCCTCTGGCGAGGCGCGCATCGACATGTCGGCGC
GCTACCTGCAAACCGCCAAGGAGATTCGCGGCGGCACCGCAAACGGCGTGATGACATTCACGATCACCTATTGA

Upstream 100 bases:

>100_bases
ACGCGCGTCACACGCTGTGCCGGTTCCGGATCACGCGCCAAGAACGCAACCAGCCGCTCACCTGCCAGCCGGCCCGCTCG
CTTGCGGCCCGCCACGCGCC

Downstream 100 bases:

>100_bases
TTCATTCCACGATGCCGTGACCACCAACCCGCCCACCACCCTACCGCCTTGCCCGCCGCTAACCCGCAGCAGCCGATCCG
GTCGCGCCGCGCCGGGTCGG

Product: fimbria adhesin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MIHRGRHLCLLILLLGLAPAVHAGCTRNPDWGGTRIVAAPGGSFSADPALPVGTVITEGRLTMPTPSKATRQYIPIARCS
VGTTEIFVGTRPLWSGDLFSTNVPGIGYRLIYPNGWHAPQAISNTNKGYLLYYPAGDFQIQFVKTGAISPGIVPAGRYGF
DSVNGYEDFITFMLRAPIVVTVPTCRVAAGSVQQTVNFGDVASTDFSGIGTGAASRPFSIRLQCDAAVSAVGLTFDAAPD
PSGQPGTLRLSGGRSAASGVGIQVLGADGKPIDWHRRIALPIASGEARIDMSARYLQTAKEIRGGTANGVMTFTITY

Sequences:

>Translated_317_residues
MIHRGRHLCLLILLLGLAPAVHAGCTRNPDWGGTRIVAAPGGSFSADPALPVGTVITEGRLTMPTPSKATRQYIPIARCS
VGTTEIFVGTRPLWSGDLFSTNVPGIGYRLIYPNGWHAPQAISNTNKGYLLYYPAGDFQIQFVKTGAISPGIVPAGRYGF
DSVNGYEDFITFMLRAPIVVTVPTCRVAAGSVQQTVNFGDVASTDFSGIGTGAASRPFSIRLQCDAAVSAVGLTFDAAPD
PSGQPGTLRLSGGRSAASGVGIQVLGADGKPIDWHRRIALPIASGEARIDMSARYLQTAKEIRGGTANGVMTFTITY
>Mature_317_residues
MIHRGRHLCLLILLLGLAPAVHAGCTRNPDWGGTRIVAAPGGSFSADPALPVGTVITEGRLTMPTPSKATRQYIPIARCS
VGTTEIFVGTRPLWSGDLFSTNVPGIGYRLIYPNGWHAPQAISNTNKGYLLYYPAGDFQIQFVKTGAISPGIVPAGRYGF
DSVNGYEDFITFMLRAPIVVTVPTCRVAAGSVQQTVNFGDVASTDFSGIGTGAASRPFSIRLQCDAAVSAVGLTFDAAPD
PSGQPGTLRLSGGRSAASGVGIQVLGADGKPIDWHRRIALPIASGEARIDMSARYLQTAKEIRGGTANGVMTFTITY

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87082421, Length=148, Percent_Identity=31.7567567567568, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 33313; Mature: 33313

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00214 FABP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHRGRHLCLLILLLGLAPAVHAGCTRNPDWGGTRIVAAPGGSFSADPALPVGTVITEGR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCE
LTMPTPSKATRQYIPIARCSVGTTEIFVGTRPLWSGDLFSTNVPGIGYRLIYPNGWHAPQ
EECCCCCHHHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCH
AISNTNKGYLLYYPAGDFQIQFVKTGAISPGIVPAGRYGFDSVNGYEDFITFMLRAPIVV
HHCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEE
TVPTCRVAAGSVQQTVNFGDVASTDFSGIGTGAASRPFSIRLQCDAAVSAVGLTFDAAPD
EECCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCC
PSGQPGTLRLSGGRSAASGVGIQVLGADGKPIDWHRRIALPIASGEARIDMSARYLQTAK
CCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEHHHHHHHHHH
EIRGGTANGVMTFTITY
HHCCCCCCCEEEEEEEC
>Mature Secondary Structure
MIHRGRHLCLLILLLGLAPAVHAGCTRNPDWGGTRIVAAPGGSFSADPALPVGTVITEGR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCE
LTMPTPSKATRQYIPIARCSVGTTEIFVGTRPLWSGDLFSTNVPGIGYRLIYPNGWHAPQ
EECCCCCHHHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCH
AISNTNKGYLLYYPAGDFQIQFVKTGAISPGIVPAGRYGFDSVNGYEDFITFMLRAPIVV
HHCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEE
TVPTCRVAAGSVQQTVNFGDVASTDFSGIGTGAASRPFSIRLQCDAAVSAVGLTFDAAPD
EECCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCC
PSGQPGTLRLSGGRSAASGVGIQVLGADGKPIDWHRRIALPIASGEARIDMSARYLQTAK
CCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEHHHHHHHHHH
EIRGGTANGVMTFTITY
HHCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1670938; 2563996 [H]