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The map label for this gene is rarD [H]

Identifier: 238027384

GI number: 238027384

Start: 1954712

End: 1955605

Strand: Direct

Name: rarD [H]

Synonym: bglu_1g17800

Alternate gene names: 238027384

Gene position: 1954712-1955605 (Clockwise)

Preceding gene: 238027379

Following gene: 238027392

Centisome position: 50.04

GC content: 60.29

Gene sequence:

>894_bases
ATGAACATCGGCATTCTTTATGCATTTCTCGCCTTCTTTCTTTGGGGGCTTTTTCCTATCTACTTCAAGGCGCTGCATGC
GATTTCGCCGCTCGAAATACTTTCACATCGAATGGCGTGGTCGCTGGTGTTCATTGCCATCCTGTTGACGGTTCGGCGAA
ACTGGAACTGGCTGCCCATTTCCCTGCGTGAACCGCGCACCGTCCTACGCTTTGCGTCGTGCGCTACCTTGCTATCCGCC
AACTGGGGGATCTATATCTGGGCAGTCAATTCGGGGCGAGTCGTGGAGGCCAGCCTCGGCTATTTCATCAACCCCTTGGC
GAACGTATTACTGGGTTTCGTGTTTTTGCATGAGCGGCTGCGGCAGTGGCAATGGGTAGCCGTGGCCACCGCAACTGTCG
GCGTGCTGTGGCTGACTTGGCAGAACGGTGCGCCCCCGTGGGTGAGTCTCGTGCTCGGCTTAACCTTCGGCAGCTACGGA
CTGCTACGTAAAACCGCGCAACTCGGTGCACTGGAAGGACTCGCGCTCGAGACGCTATTGCTGTTCCCCGTCGTCTTCCT
ATATCTGTTGTGGCTGGCAGCCCATGGCGAATCGGGCTTCGTCGCGGCACCGATCGGGATCAAGCTGCTGCTCGCGGCAG
CAGGCCCGGTGAGCGCCATACCGCTGCTGCTGTTTGCGGCCGGCGCCCGGCGCATCCCCTTGTCGCTGTTGGGTATCGTG
CAGTACGTTACCCCCACCATCCAGCTGCTGCTTGGCGTATTGGTCTACCGGGAGACGTTCGGCCTGGTGAAACTGGTCGG
CTATGGTGCAATCTGGGCGGCGCTTGTCATCTATGCCGCCGAGGGCGTGTGGCGGGCCCGCGGAGCAGTACCCTCCGCGC
CCCGCTCGACATGA

Upstream 100 bases:

>100_bases
CGAGCGTCTGCTCTGCAGACACGTTTTGCTCACCACCCAGATCGACCGTGCCCGCCAATCAATCCCCTTTCCGCCGTGCG
CCGCGCGCCACCCATACACG

Downstream 100 bases:

>100_bases
CACATCCCCGCCCTTTGACGGGCGGTTGAAAAGGTCTTGGCGGACGGATGGCGTAAGGAAATCCGGCCTCTCGTGACGGC
CAGGATGCTGCTCGCGCCAC

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNIGILYAFLAFFLWGLFPIYFKALHAISPLEILSHRMAWSLVFIAILLTVRRNWNWLPISLREPRTVLRFASCATLLSA
NWGIYIWAVNSGRVVEASLGYFINPLANVLLGFVFLHERLRQWQWVAVATATVGVLWLTWQNGAPPWVSLVLGLTFGSYG
LLRKTAQLGALEGLALETLLLFPVVFLYLLWLAAHGESGFVAAPIGIKLLLAAAGPVSAIPLLLFAAGARRIPLSLLGIV
QYVTPTIQLLLGVLVYRETFGLVKLVGYGAIWAALVIYAAEGVWRARGAVPSAPRST

Sequences:

>Translated_297_residues
MNIGILYAFLAFFLWGLFPIYFKALHAISPLEILSHRMAWSLVFIAILLTVRRNWNWLPISLREPRTVLRFASCATLLSA
NWGIYIWAVNSGRVVEASLGYFINPLANVLLGFVFLHERLRQWQWVAVATATVGVLWLTWQNGAPPWVSLVLGLTFGSYG
LLRKTAQLGALEGLALETLLLFPVVFLYLLWLAAHGESGFVAAPIGIKLLLAAAGPVSAIPLLLFAAGARRIPLSLLGIV
QYVTPTIQLLLGVLVYRETFGLVKLVGYGAIWAALVIYAAEGVWRARGAVPSAPRST
>Mature_297_residues
MNIGILYAFLAFFLWGLFPIYFKALHAISPLEILSHRMAWSLVFIAILLTVRRNWNWLPISLREPRTVLRFASCATLLSA
NWGIYIWAVNSGRVVEASLGYFINPLANVLLGFVFLHERLRQWQWVAVATATVGVLWLTWQNGAPPWVSLVLGLTFGSYG
LLRKTAQLGALEGLALETLLLFPVVFLYLLWLAAHGESGFVAAPIGIKLLLAAAGPVSAIPLLLFAAGARRIPLSLLGIV
QYVTPTIQLLLGVLVYRETFGLVKLVGYGAIWAALVIYAAEGVWRARGAVPSAPRST

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=284, Percent_Identity=42.2535211267606, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32636; Mature: 32636

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGILYAFLAFFLWGLFPIYFKALHAISPLEILSHRMAWSLVFIAILLTVRRNWNWLPI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
SLREPRTVLRFASCATLLSANWGIYIWAVNSGRVVEASLGYFINPLANVLLGFVFLHERL
ECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
RQWQWVAVATATVGVLWLTWQNGAPPWVSLVLGLTFGSYGLLRKTAQLGALEGLALETLL
HHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LFPVVFLYLLWLAAHGESGFVAAPIGIKLLLAAAGPVSAIPLLLFAAGARRIPLSLLGIV
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH
QYVTPTIQLLLGVLVYRETFGLVKLVGYGAIWAALVIYAAEGVWRARGAVPSAPRST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNIGILYAFLAFFLWGLFPIYFKALHAISPLEILSHRMAWSLVFIAILLTVRRNWNWLPI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
SLREPRTVLRFASCATLLSANWGIYIWAVNSGRVVEASLGYFINPLANVLLGFVFLHERL
ECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
RQWQWVAVATATVGVLWLTWQNGAPPWVSLVLGLTFGSYGLLRKTAQLGALEGLALETLL
HHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LFPVVFLYLLWLAAHGESGFVAAPIGIKLLLAAAGPVSAIPLLLFAAGARRIPLSLLGIV
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH
QYVTPTIQLLLGVLVYRETFGLVKLVGYGAIWAALVIYAAEGVWRARGAVPSAPRST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA