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The map label for this gene is gbpR [H]

Identifier: 238027392

GI number: 238027392

Start: 1964771

End: 1965727

Strand: Direct

Name: gbpR [H]

Synonym: bglu_1g17880

Alternate gene names: 238027392

Gene position: 1964771-1965727 (Clockwise)

Preceding gene: 238027384

Following gene: 238027396

Centisome position: 50.29

GC content: 71.37

Gene sequence:

>957_bases
ATGCTTGATTCGAACCCCTGGTACATCCGCACGCGCCTGAAGACACGGCAGCTGCTGCTCGTGGTGGCGCTCGCCGAGGA
AGGCAACATCCACCGCGCGGCGGCCGCGCTGAGCATGACGCAGCCGGCCGCCTCGAAACTGCTGCGCGAACTGGAGGAGA
TGCTCGGCACGGTATTGTTCGAGCGCATGCCGCGCGGCGTGAAGCCGACGCTGTACGGCGACGCGCTGATCCGCCATGCG
CGCGCCGCGCTCGGCAGCCTGGAGCAGGCGCAGGAGGAACTGAGCGCGCTGAAGGCGGGACGCCTCGGGCATGTGGCGGT
GGGCGCGATCACCTCGCCCGGCGTGCGCCTGCTGCCGGCCGCGGTGGCGGACCTGAAGCGGCGCCACGCCGACATCCGCA
TCTCGGTGGAGATCGACACCAGCAACGTGCTGCTCGAACGCCTGGCGCAGGACAAGCTCGACATCGTGATCGGCCGGCTC
TCGCCCGAGCACGACAAGCGCCAGCTGCGCTACGAAACGCTGGCCGGCGAGCTGGTGCGTGCCGTGGTGCGGCGCGGGCA
TCCGCTGCTGGCCGACGCGCCCAGCGCGCTGGAGGAGCTGCGGCGCCACGCCTGGATCGTGCCGCCGGCCGGCAGCGTGC
TGCGCCACCGCTTCGAGCTGATGTTCCAGCGTGCCAGCCTCGCGCCGCCGTCGAGCGTGGTGGAGACGCCCGCGCTGCTG
TTCATCACGCGCCTGCTCGAGAAGAGCGACATGATCGCGGTGCTGGCCGAGGACGTGGCCGACTATTACGCCGGGCACGG
CATGGTGGAGATCCTGCCGCTGCCGATGGAATGCCGGATGGACGACTTCGGGCTCATCACGCCGGCCGAGAAGCTGCTCT
CGCCGGCCGCCGCGCTGATGATCGAGGCGCTGCGCGCCGCCGGCCGCGAGACTTACGCGGCGCCCGCCGGCGCCTGA

Upstream 100 bases:

>100_bases
CTAGATTTGCGTGCAGTCTATTAACAAAGTTGATAACGTACTAATGAAAAGTTGGACGTCTCACATATCGATCTCCGTAT
CGGTGCAAATACTTAATTTC

Downstream 100 bases:

>100_bases
GCCAGCGGGCCGGCCGCTGCGATCCGATGATCCGATGGGCGCGGCCCGCCGCCGGCCGGATTCAGCGCCTCGATCAGCCC
CCTGCCGAGCGGGTAGCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Galactose-binding protein regulator; GBP regulator [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLDSNPWYIRTRLKTRQLLLVVALAEEGNIHRAAAALSMTQPAASKLLRELEEMLGTVLFERMPRGVKPTLYGDALIRHA
RAALGSLEQAQEELSALKAGRLGHVAVGAITSPGVRLLPAAVADLKRRHADIRISVEIDTSNVLLERLAQDKLDIVIGRL
SPEHDKRQLRYETLAGELVRAVVRRGHPLLADAPSALEELRRHAWIVPPAGSVLRHRFELMFQRASLAPPSSVVETPALL
FITRLLEKSDMIAVLAEDVADYYAGHGMVEILPLPMECRMDDFGLITPAEKLLSPAAALMIEALRAAGRETYAAPAGA

Sequences:

>Translated_318_residues
MLDSNPWYIRTRLKTRQLLLVVALAEEGNIHRAAAALSMTQPAASKLLRELEEMLGTVLFERMPRGVKPTLYGDALIRHA
RAALGSLEQAQEELSALKAGRLGHVAVGAITSPGVRLLPAAVADLKRRHADIRISVEIDTSNVLLERLAQDKLDIVIGRL
SPEHDKRQLRYETLAGELVRAVVRRGHPLLADAPSALEELRRHAWIVPPAGSVLRHRFELMFQRASLAPPSSVVETPALL
FITRLLEKSDMIAVLAEDVADYYAGHGMVEILPLPMECRMDDFGLITPAEKLLSPAAALMIEALRAAGRETYAAPAGA
>Mature_318_residues
MLDSNPWYIRTRLKTRQLLLVVALAEEGNIHRAAAALSMTQPAASKLLRELEEMLGTVLFERMPRGVKPTLYGDALIRHA
RAALGSLEQAQEELSALKAGRLGHVAVGAITSPGVRLLPAAVADLKRRHADIRISVEIDTSNVLLERLAQDKLDIVIGRL
SPEHDKRQLRYETLAGELVRAVVRRGHPLLADAPSALEELRRHAWIVPPAGSVLRHRFELMFQRASLAPPSSVVETPALL
FITRLLEKSDMIAVLAEDVADYYAGHGMVEILPLPMECRMDDFGLITPAEKLLSPAAALMIEALRAAGRETYAAPAGA

Specific function: Does not seem to be required for sbpA expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=296, Percent_Identity=28.7162162162162, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787601, Length=269, Percent_Identity=28.996282527881, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI157672245, Length=262, Percent_Identity=27.0992366412214, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789506, Length=258, Percent_Identity=22.093023255814, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI145693105, Length=169, Percent_Identity=26.0355029585799, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=32.4137931034483, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=223, Percent_Identity=25.5605381165919, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34816; Mature: 34816

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50931 HTH_LYSR ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSNPWYIRTRLKTRQLLLVVALAEEGNIHRAAAALSMTQPAASKLLRELEEMLGTVLF
CCCCCCEEEEEEHHHHHEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ERMPRGVKPTLYGDALIRHARAALGSLEQAQEELSALKAGRLGHVAVGAITSPGVRLLPA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
AVADLKRRHADIRISVEIDTSNVLLERLAQDKLDIVIGRLSPEHDKRQLRYETLAGELVR
HHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHH
AVVRRGHPLLADAPSALEELRRHAWIVPPAGSVLRHRFELMFQRASLAPPSSVVETPALL
HHHHCCCCCCCCCHHHHHHHHHCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FITRLLEKSDMIAVLAEDVADYYAGHGMVEILPLPMECRMDDFGLITPAEKLLSPAAALM
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHH
IEALRAAGRETYAAPAGA
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLDSNPWYIRTRLKTRQLLLVVALAEEGNIHRAAAALSMTQPAASKLLRELEEMLGTVLF
CCCCCCEEEEEEHHHHHEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ERMPRGVKPTLYGDALIRHARAALGSLEQAQEELSALKAGRLGHVAVGAITSPGVRLLPA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
AVADLKRRHADIRISVEIDTSNVLLERLAQDKLDIVIGRLSPEHDKRQLRYETLAGELVR
HHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHH
AVVRRGHPLLADAPSALEELRRHAWIVPPAGSVLRHRFELMFQRASLAPPSSVVETPALL
HHHHCCCCCCCCCHHHHHHHHHCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FITRLLEKSDMIAVLAEDVADYYAGHGMVEILPLPMECRMDDFGLITPAEKLLSPAAALM
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHH
IEALRAAGRETYAAPAGA
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10361275 [H]