| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027358
Identifier: 238027358
GI number: 238027358
Start: 1924627
End: 1925706
Strand: Direct
Name: 238027358
Synonym: bglu_1g17480
Alternate gene names: NA
Gene position: 1924627-1925706 (Clockwise)
Preceding gene: 238027357
Following gene: 238027359
Centisome position: 49.27
GC content: 61.85
Gene sequence:
>1080_bases ATGGCGGATTTTGTGCAATCGGCCAAGCTGCCGACGCGGCGACTCGTCCCATACGCTGATTACCGCATCACCCTCGACGG GCGCGACCTGTCACGCACGATTGCGCCGTATCTGGTCTATCTCACGTTGAGCGAGTCACGCGCCGACGAAGCGGATTCGC TCAATCTCGTGTTGGACGACGCGCGCGGCGATCTGGAATTGCCGAAGCGCGGCGCCGAACTGAAGCTGTCGATCGGGTGG GAGGGCGAAACGCTCGTGGACAAAGGCACCTTCACGATCGATGAATTCGAGTTCCACGGCGCACCCGATCAGATCACGGT CAGCGCGCGTTCGGCGTCAATGACGGATGCCATGCACGAGCGGCGCGACAAAAGCTGGCACGGTCAGACGATCGGCGATA TCGTCAAGGCGATCGCCGTTCGGCACAAGCTGACACCCGCGCTCGGCGACGCGCTCGCCAAGGTCAGGATCGCGCATATC GACCAGACGAGCGAAAGCGACATGTCATTTTTGACGCGGCTCGCGAAGCGGTACGACGCGGTGATGACGGTCAAGGATGG GCGGCTGCTGTTTATGCCGATCGGGGCGGGCACGAGCGCGAGCGGTAAGCCGCTGCCGACACTGGAGATCCGGAAGGCGA AGGGTGATTCGTATCGCTATCACGTGTCGCAGCGCGAAAGCTACACGTCGGTGCGTGCACGTTGGCACACGTCGAAGAAG GGCAAGCAAGAGTCCGTGATCGTCGGCGGCGAAAACAACCGCAGCACGAAGCTGTTGCCGGAAATCTACGGCTCGCGCGC TGATGCAGAAGCGGCGGCCAAGGCTGAATACGCACGCACGCAGCGCGGACAGGCGACGTTCAATATGACACTCGCGCTTG GCCGTGCCGACGTGTACCCGGAAATGACCGTCAACGCGAAGGGCTTCAAACCTGATATCGATGCGACACCGTGGCTCGTG AAGCGCGTCGTGTCTCGGATCGACGGTAACGGCGGGTTCACGTCATCGCTCGAAATGGAGATGCGCGACGATCCGACGAC CGATCGGCACCGAACGCACTTCCGGAAGGGAGGGAAATAG
Upstream 100 bases:
>100_bases GGCGCCGCGACGAGCGAGCCGACGACTGGATCGCTCGACAAGGCACCGGCCGGGGCGACGCCGCCCTACGTCAAGCCGAA AGCGAAGAAGGGGTAGGGCG
Downstream 100 bases:
>100_bases AATCGCCTAGAATGTAGCTGAGCTCGTCCACGAGGACTCACTTCAATTGGTTGACGTGTGCAACACCACCTAACACAGCG AGAACCCAAAATGAACCGTG
Product: phage protein D
Products: NA
Alternate protein names: Phage Late Control D Family Protein; Phage Late Control D; Bacteriophage Regulatory Protein; Phage Late Control Gene D Protein; Late Control Gene D Protein; Tail Protein D; Phage-Related Tail Protein; Phage Protein D; Phage Late Control D Protein; Regulator Of Late Gene Expression; Bacteriophage Protein; Pyocin R2_PP Tail Formation; Prophage Tail Protein; Fels-2 Prophage Protein; Phage Protein D-Like; Phage Late Control; Phage Protein; Gene D Protein; Phage Tail Protein; Phage-Related Late Control Gene Protein; Phage Tail Protein D; Pyocin R2_PP Tail Formation GPD; Cytoplasmic Protein; Phage Late Control Gene D Protein GpD; Gene Late Control D Protein; Bacteriophage P2 GpD Protein; Bacteriophage Late Gene Regulator; Bacteriophage Late Control D Protein; Bacteriophage-Related Tail D Protein; Phage-Like Tail Protein; Prophage; Bacteriophage P2 Tail Protein GPD; Phage-Like Protein; Late Control D Protein; Control Protein For Phage Late Genes Expression; Phage Regulator; Regulator Of Late Phage Gene Expression; Phage Late Control Gene D Protein-Like Protein; Phage Late Control Gene D Protein GPD; Late Control Gene D Protein Prophage; Bacteriophage Late Gene Control Protein D; Bacteriophage Tail Protein D; Late Gene Regulator
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MADFVQSAKLPTRRLVPYADYRITLDGRDLSRTIAPYLVYLTLSESRADEADSLNLVLDDARGDLELPKRGAELKLSIGW EGETLVDKGTFTIDEFEFHGAPDQITVSARSASMTDAMHERRDKSWHGQTIGDIVKAIAVRHKLTPALGDALAKVRIAHI DQTSESDMSFLTRLAKRYDAVMTVKDGRLLFMPIGAGTSASGKPLPTLEIRKAKGDSYRYHVSQRESYTSVRARWHTSKK GKQESVIVGGENNRSTKLLPEIYGSRADAEAAAKAEYARTQRGQATFNMTLALGRADVYPEMTVNAKGFKPDIDATPWLV KRVVSRIDGNGGFTSSLEMEMRDDPTTDRHRTHFRKGGK
Sequences:
>Translated_359_residues MADFVQSAKLPTRRLVPYADYRITLDGRDLSRTIAPYLVYLTLSESRADEADSLNLVLDDARGDLELPKRGAELKLSIGW EGETLVDKGTFTIDEFEFHGAPDQITVSARSASMTDAMHERRDKSWHGQTIGDIVKAIAVRHKLTPALGDALAKVRIAHI DQTSESDMSFLTRLAKRYDAVMTVKDGRLLFMPIGAGTSASGKPLPTLEIRKAKGDSYRYHVSQRESYTSVRARWHTSKK GKQESVIVGGENNRSTKLLPEIYGSRADAEAAAKAEYARTQRGQATFNMTLALGRADVYPEMTVNAKGFKPDIDATPWLV KRVVSRIDGNGGFTSSLEMEMRDDPTTDRHRTHFRKGGK >Mature_358_residues ADFVQSAKLPTRRLVPYADYRITLDGRDLSRTIAPYLVYLTLSESRADEADSLNLVLDDARGDLELPKRGAELKLSIGWE GETLVDKGTFTIDEFEFHGAPDQITVSARSASMTDAMHERRDKSWHGQTIGDIVKAIAVRHKLTPALGDALAKVRIAHID QTSESDMSFLTRLAKRYDAVMTVKDGRLLFMPIGAGTSASGKPLPTLEIRKAKGDSYRYHVSQRESYTSVRARWHTSKKG KQESVIVGGENNRSTKLLPEIYGSRADAEAAAKAEYARTQRGQATFNMTLALGRADVYPEMTVNAKGFKPDIDATPWLVK RVVSRIDGNGGFTSSLEMEMRDDPTTDRHRTHFRKGGK
Specific function: Unknown
COG id: COG3500
COG function: function code R; Phage protein D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39894; Mature: 39762
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS00436 PEROXIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFVQSAKLPTRRLVPYADYRITLDGRDLSRTIAPYLVYLTLSESRADEADSLNLVLDD CCCHHHHCCCCHHHCCCCCCEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEC ARGDLELPKRGAELKLSIGWEGETLVDKGTFTIDEFEFHGAPDQITVSARSASMTDAMHE CCCCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEEEECCCCCEEEEEECCCHHHHHHHH RRDKSWHGQTIGDIVKAIAVRHKLTPALGDALAKVRIAHIDQTSESDMSFLTRLAKRYDA HHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCE VMTVKDGRLLFMPIGAGTSASGKPLPTLEIRKAKGDSYRYHVSQRESYTSVRARWHTSKK EEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCC GKQESVIVGGENNRSTKLLPEIYGSRADAEAAAKAEYARTQRGQATFNMTLALGRADVYP CCCCEEEECCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC EMTVNAKGFKPDIDATPWLVKRVVSRIDGNGGFTSSLEMEMRDDPTTDRHRTHFRKGGK CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCC >Mature Secondary Structure ADFVQSAKLPTRRLVPYADYRITLDGRDLSRTIAPYLVYLTLSESRADEADSLNLVLDD CCHHHHCCCCHHHCCCCCCEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEC ARGDLELPKRGAELKLSIGWEGETLVDKGTFTIDEFEFHGAPDQITVSARSASMTDAMHE CCCCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEEEECCCCCEEEEEECCCHHHHHHHH RRDKSWHGQTIGDIVKAIAVRHKLTPALGDALAKVRIAHIDQTSESDMSFLTRLAKRYDA HHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCE VMTVKDGRLLFMPIGAGTSASGKPLPTLEIRKAKGDSYRYHVSQRESYTSVRARWHTSKK EEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCC GKQESVIVGGENNRSTKLLPEIYGSRADAEAAAKAEYARTQRGQATFNMTLALGRADVYP CCCCEEEECCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC EMTVNAKGFKPDIDATPWLVKRVVSRIDGNGGFTSSLEMEMRDDPTTDRHRTHFRKGGK CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA