| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027245
Identifier: 238027245
GI number: 238027245
Start: 1790927
End: 1792642
Strand: Direct
Name: 238027245
Synonym: bglu_1g16320
Alternate gene names: NA
Gene position: 1790927-1792642 (Clockwise)
Preceding gene: 238027244
Following gene: 238027246
Centisome position: 45.84
GC content: 52.04
Gene sequence:
>1716_bases ATGACCGCTCCGAATACCAACACTGATCCTCTGTCCGCCGTAACGGTTTATTTCAAGGATCATTTTGGCCGACCGATCCA GGATTTGAAAATCGAGATCAAGGGTATGGAAGACCGCGCAAATCAGGTCTATCACGCCGCATCGACAAATTCGGAGGGCG CGATCCGGTTCTCGGTTCAAATGGGCACCGCGCTATCCGTGCATGTGAAGCGTTGGACTAGCGACACGATGAAGGAAGTC GCTCGTTTGAACGCGTCTCTGTCTCAGGCCTACTTCAATCTGACGAGCCCGAAGACCAAACATGAGTTGCCGACGAAGGT CGACGATACGGCGAAAGGCGATTACTGGCGTGGTACTTACCTTGTCAAGCCGCACGACAATCTGACCACAATCGCGAAGA AATATCATACGAGCGTTGATTTGCTCAAGCGGGTGAATGGACTGAAATCAGACCTCATCGTAGTAGGACAAAAGTTGAAG GTCCCCCCTGCCGAAACTCGGAAATCCGATGAGCCGACGCCAAAGAAACCAAACCCACCTGGTAGCCCACCGCAGAACGA CCATCCGAACAACGCTAGTGGAGCGCCGACTTCGGTGCCTCGTCAGGGCGCTGCACCTATCATTTTCCCAATACAAACCC GCCCGCTAAATGACGAGGGGGGCGTATACGGGACGACGTCGGCTGACTATACATGGACCAAACCTTTACATGGCGGCGGT CATGATCAGGCAAGATTTGGTGCGAATCGTGCTGGCGGTCGAAAGCATGCGGCACGAGACCTTTACGTCCAGGCACACAC TCCGATTGTAGCGATTGCACCGGGCGTCGTTATCAAGTGCGAATTTTTTTATTGCCAAACTTGGCAGATCAGTATTCATC ATAAGACTTCTGATGGTCGAGAGTTTATCGCTTTGTACGGCGAAGTCGATCCATCGTCCACAAAGGTGAAAGTCGGAGAC ACAGTAAGCCAGGGGCAAGTTCTTGCTAACAGCGGAGTACTGTTGAAGGGAAATGGAACGCCACTGCATGTCGTCGGAAG CGAAAATGTGTCGATGCTCCATTTCGAGACGTATTCGGGCGCTCTCGGATTCGATCCCCATTCGAAACTGAACGGATCAT CGTTGGCCGCTCCGTTCCAGCGTCGCGGCGACTTGATCGATTCGCTTGCAATTTTGCAGGAGGGCTATAAGGCGACGTTT CTCGATGCGCCTCCCCTCAAGCCTATTGGTCAACGGATCCCGATAGCGCAATTGAAGACCTCGGATCAAGGCAAGGCATT TATCAAGGGGTGGGAGAGTGTGCATTATGACGCTACGAAGGAAAATACTTACTATTACAACGACAGTAAAGGCTACTGCA CGGTTGGCTGGGGTCACCTGATTGCCAAAAGCAGTTGTGCGGCGAACGGGTACATTGCGATGTCGAGCAAGATAACCGTT GCGGAGGCTCAAACACTTTTTGACAACGATGTCGCGGTGATCGAAGGTCGTGTCAAGAATGCGATCAGCGTACCCCTCTA CCAGCACGAGTACGATGCACTCATCTCGCTCGCCTTTAATATGGGCAGTCTGAGCAAAGCGCCAAGTCTGTGTCGCAAAC TGAACAACGGTGACTATACAGGAGCGCCCGTCGAATTCTTGGATATCGAGAACAAGACACGCCGTGAACGAGAGCACGAC ATGTTTTGTCTAGGTACTTACAATTCCAATCATTGA
Upstream 100 bases:
>100_bases AGCCTCATCGTCCAGCGATTCCGGCGAAGCCACTCCAGACGACCCGGACCATTACGTTAATCACAGCGCCTGAACGCCGT TCGAGCCAATCCAAAAAATC
Downstream 100 bases:
>100_bases ACGAAGGATGTCCTTTACTTTCATGAAGAAACTAGCACAGATTTTACTCCTTCTAGTGTCTGCGGTCTTTATGCCGGTGT ATGCTTCGGCCCAGGAAACA
Product: peptidoglycan-binding LysM
Products: NA
Alternate protein names: Phage-Related Lysozyme
Number of amino acids: Translated: 571; Mature: 570
Protein sequence:
>571_residues MTAPNTNTDPLSAVTVYFKDHFGRPIQDLKIEIKGMEDRANQVYHAASTNSEGAIRFSVQMGTALSVHVKRWTSDTMKEV ARLNASLSQAYFNLTSPKTKHELPTKVDDTAKGDYWRGTYLVKPHDNLTTIAKKYHTSVDLLKRVNGLKSDLIVVGQKLK VPPAETRKSDEPTPKKPNPPGSPPQNDHPNNASGAPTSVPRQGAAPIIFPIQTRPLNDEGGVYGTTSADYTWTKPLHGGG HDQARFGANRAGGRKHAARDLYVQAHTPIVAIAPGVVIKCEFFYCQTWQISIHHKTSDGREFIALYGEVDPSSTKVKVGD TVSQGQVLANSGVLLKGNGTPLHVVGSENVSMLHFETYSGALGFDPHSKLNGSSLAAPFQRRGDLIDSLAILQEGYKATF LDAPPLKPIGQRIPIAQLKTSDQGKAFIKGWESVHYDATKENTYYYNDSKGYCTVGWGHLIAKSSCAANGYIAMSSKITV AEAQTLFDNDVAVIEGRVKNAISVPLYQHEYDALISLAFNMGSLSKAPSLCRKLNNGDYTGAPVEFLDIENKTRREREHD MFCLGTYNSNH
Sequences:
>Translated_571_residues MTAPNTNTDPLSAVTVYFKDHFGRPIQDLKIEIKGMEDRANQVYHAASTNSEGAIRFSVQMGTALSVHVKRWTSDTMKEV ARLNASLSQAYFNLTSPKTKHELPTKVDDTAKGDYWRGTYLVKPHDNLTTIAKKYHTSVDLLKRVNGLKSDLIVVGQKLK VPPAETRKSDEPTPKKPNPPGSPPQNDHPNNASGAPTSVPRQGAAPIIFPIQTRPLNDEGGVYGTTSADYTWTKPLHGGG HDQARFGANRAGGRKHAARDLYVQAHTPIVAIAPGVVIKCEFFYCQTWQISIHHKTSDGREFIALYGEVDPSSTKVKVGD TVSQGQVLANSGVLLKGNGTPLHVVGSENVSMLHFETYSGALGFDPHSKLNGSSLAAPFQRRGDLIDSLAILQEGYKATF LDAPPLKPIGQRIPIAQLKTSDQGKAFIKGWESVHYDATKENTYYYNDSKGYCTVGWGHLIAKSSCAANGYIAMSSKITV AEAQTLFDNDVAVIEGRVKNAISVPLYQHEYDALISLAFNMGSLSKAPSLCRKLNNGDYTGAPVEFLDIENKTRREREHD MFCLGTYNSNH >Mature_570_residues TAPNTNTDPLSAVTVYFKDHFGRPIQDLKIEIKGMEDRANQVYHAASTNSEGAIRFSVQMGTALSVHVKRWTSDTMKEVA RLNASLSQAYFNLTSPKTKHELPTKVDDTAKGDYWRGTYLVKPHDNLTTIAKKYHTSVDLLKRVNGLKSDLIVVGQKLKV PPAETRKSDEPTPKKPNPPGSPPQNDHPNNASGAPTSVPRQGAAPIIFPIQTRPLNDEGGVYGTTSADYTWTKPLHGGGH DQARFGANRAGGRKHAARDLYVQAHTPIVAIAPGVVIKCEFFYCQTWQISIHHKTSDGREFIALYGEVDPSSTKVKVGDT VSQGQVLANSGVLLKGNGTPLHVVGSENVSMLHFETYSGALGFDPHSKLNGSSLAAPFQRRGDLIDSLAILQEGYKATFL DAPPLKPIGQRIPIAQLKTSDQGKAFIKGWESVHYDATKENTYYYNDSKGYCTVGWGHLIAKSSCAANGYIAMSSKITVA EAQTLFDNDVAVIEGRVKNAISVPLYQHEYDALISLAFNMGSLSKAPSLCRKLNNGDYTGAPVEFLDIENKTRREREHDM FCLGTYNSNH
Specific function: Unknown
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62471; Mature: 62340
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPNTNTDPLSAVTVYFKDHFGRPIQDLKIEIKGMEDRANQVYHAASTNSEGAIRFSVQ CCCCCCCCCCCEEEEEEEHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEE MGTALSVHVKRWTSDTMKEVARLNASLSQAYFNLTSPKTKHELPTKVDDTAKGDYWRGTY ECCEEEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCEE LVKPHDNLTTIAKKYHTSVDLLKRVNGLKSDLIVVGQKLKVPPAETRKSDEPTPKKPNPP EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCC GSPPQNDHPNNASGAPTSVPRQGAAPIIFPIQTRPLNDEGGVYGTTSADYTWTKPLHGGG CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCEECCCCCCCC HDQARFGANRAGGRKHAARDLYVQAHTPIVAIAPGVVIKCEFFYCQTWQISIHHKTSDGR CCHHHCCCCCCCCCCCCCEEEEEEECCCEEEECCCEEEEEEEEEEEEEEEEEEEECCCCC EFIALYGEVDPSSTKVKVGDTVSQGQVLANSGVLLKGNGTPLHVVGSENVSMLHFETYSG EEEEEEECCCCCCCEEEECCCCCCCEEEECCCEEEECCCCEEEEECCCCEEEEEEEECCC ALGFDPHSKLNGSSLAAPFQRRGDLIDSLAILQEGYKATFLDAPPLKPIGQRIPIAQLKT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCHHEECC SDQGKAFIKGWESVHYDATKENTYYYNDSKGYCTVGWGHLIAKSSCAANGYIAMSSKITV CCCCCCEEECCCCEECCCCCCCEEEEECCCCEEEEEHHHHHHCCCCCCCCEEEECCEEEE AEAQTLFDNDVAVIEGRVKNAISVPLYQHEYDALISLAFNMGSLSKAPSLCRKLNNGDYT EHHHHHHCCCEEEEECCCCCEEECCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC GAPVEFLDIENKTRREREHDMFCLGTYNSNH CCCEEEEECCCHHHHHHHCCEEEEECCCCCC >Mature Secondary Structure TAPNTNTDPLSAVTVYFKDHFGRPIQDLKIEIKGMEDRANQVYHAASTNSEGAIRFSVQ CCCCCCCCCCEEEEEEEHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEE MGTALSVHVKRWTSDTMKEVARLNASLSQAYFNLTSPKTKHELPTKVDDTAKGDYWRGTY ECCEEEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCEE LVKPHDNLTTIAKKYHTSVDLLKRVNGLKSDLIVVGQKLKVPPAETRKSDEPTPKKPNPP EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCC GSPPQNDHPNNASGAPTSVPRQGAAPIIFPIQTRPLNDEGGVYGTTSADYTWTKPLHGGG CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCEECCCCCCCC HDQARFGANRAGGRKHAARDLYVQAHTPIVAIAPGVVIKCEFFYCQTWQISIHHKTSDGR CCHHHCCCCCCCCCCCCCEEEEEEECCCEEEECCCEEEEEEEEEEEEEEEEEEEECCCCC EFIALYGEVDPSSTKVKVGDTVSQGQVLANSGVLLKGNGTPLHVVGSENVSMLHFETYSG EEEEEEECCCCCCCEEEECCCCCCCEEEECCCEEEECCCCEEEEECCCCEEEEEEEECCC ALGFDPHSKLNGSSLAAPFQRRGDLIDSLAILQEGYKATFLDAPPLKPIGQRIPIAQLKT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCHHEECC SDQGKAFIKGWESVHYDATKENTYYYNDSKGYCTVGWGHLIAKSSCAANGYIAMSSKITV CCCCCCEEECCCCEECCCCCCCEEEEECCCCEEEEEHHHHHHCCCCCCCCEEEECCEEEE AEAQTLFDNDVAVIEGRVKNAISVPLYQHEYDALISLAFNMGSLSKAPSLCRKLNNGDYT EHHHHHHCCCEEEEECCCCCEEECCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC GAPVEFLDIENKTRREREHDMFCLGTYNSNH CCCEEEEECCCHHHHHHHCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA